Back to structures

KJ608188.1__AIS73973.1__X__00036

Bact-Vir

KJ608188.1__AIS73973.1__X__00036

Identity

Accession:
KJ608188 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.80 64.0 5.99e-01 100.0% 70.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 58.0 6.16e-01 100.0% 90.9%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.71 46.0 3.50e-01 100.0% 29.4%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 48.0 3.68e-01 100.0% 33.1%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 43.0 3.17e-01 100.0% 25.0%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.81e-01 100.0% 86.8%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 52.0 5.08e-01 100.0% 80.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 43.0 4.72e-01 100.0% 93.8%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.63 56.0 4.97e-01 100.0% 71.1%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.62 45.0 3.78e-01 100.0% 44.1%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 50.0 4.72e-01 100.0% 73.7%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.52e-01 100.0% 75.0%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 51.0 4.17e-01 100.0% 50.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.52e-01 100.0% 89.1%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 5.02e-01 100.0% 87.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.60 36.0 4.11e-01 73.0% 82.6%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.74e-01 100.0% 80.6%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 49.0 4.60e-01 100.0% 73.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.94e-01 100.0% 89.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 5.02e-01 100.0% 98.3%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.39e-01 100.0% 75.0%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 51.0 3.97e-01 100.0% 44.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.81e-01 95.2% 95.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.38e-01 100.0% 28.4%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 38.0 3.90e-01 84.1% 72.4%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 50.0 4.89e-01 98.4% 90.0%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.58 33.0 3.10e-01 77.8% 44.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 49.0 4.89e-01 98.4% 94.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.62e-01 100.0% 49.5%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.60e-01 100.0% 94.8%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.56 49.0 3.81e-01 100.0% 69.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 49.0 4.82e-01 98.4% 100.0%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.56 49.0 3.29e-01 100.0% 27.2%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 3.53e-01 100.0% 44.8%
2rovA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.89e-01 100.0% 89.7%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.20e-01 100.0% 39.7%
1azzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 46.0 3.89e-01 100.0% 57.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.49e-01 100.0% 91.9%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 47.0 4.72e-01 100.0% 95.5%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.61e-01 100.0% 90.8%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.97e-01 100.0% 86.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 46.0 3.91e-01 98.4% 68.6%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 4.24e-01 100.0% 79.7%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.42e-01 93.7% 88.8%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.29e-01 88.9% 76.2%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 41.0 3.49e-01 88.9% 83.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.84e-01 100.0% 90.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 38.0 3.67e-01 100.0% 65.8%
1x9tA02 3.90.1620.10 Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 0.53 44.0 2.97e-01 100.0% 37.9%
1fuiA03 3.20.14.10 Alpha Beta › Alpha-Beta Barrel › L-fucose Isomerase; Chain A, domain 3 › L-fucose/L-arabinose isomerase, C-terminal 0.52 43.0 3.01e-01 100.0% 31.1%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.52 43.0 3.83e-01 100.0% 65.0%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.19e-01 100.0% 38.0%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 44.0 3.35e-01 100.0% 63.9%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.30e-01 95.2% 78.8%
1eq9A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 43.0 3.61e-01 98.4% 59.8%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.63e-01 93.7% 62.7%
4lk4A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 43.0 3.57e-01 100.0% 51.2%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.51 44.0 3.20e-01 100.0% 39.9%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.51 42.0 3.81e-01 100.0% 94.7%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.51 40.0 3.54e-01 100.0% 54.5%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.74e-01 98.4% 69.5%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.51 41.0 3.17e-01 98.4% 83.0%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 40.0 2.98e-01 100.0% 31.3%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.81e-01 100.0% 88.0%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.50 36.0 2.91e-01 100.0% 36.0%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.50 36.0 2.54e-01 82.5% 62.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.87 61.0 6.50e-01 100.0% 83.6%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.82 58.0 6.21e-01 100.0% 85.5%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.81 65.0 6.14e-01 100.0% 72.0%
5061147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 63.0 5.41e-01 100.0% 65.3%
3959440 4.1.1.180 beta barrels › SH3 › SH3 › SH3 › DUF3107 0.67 59.0 5.88e-01 100.0% 95.4%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.65 51.0 4.56e-01 100.0% 60.0%
3177250 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.64 57.0 3.89e-01 100.0% 80.3%
3940233 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.55e-01 98.4% 57.3%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.63 51.0 5.29e-01 100.0% 93.3%
3831275 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.63 55.0 3.49e-01 100.0% 99.7%
4291404 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.13e-01 98.4% 90.7%
3607782 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.62 53.0 3.68e-01 100.0% 95.7%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.62 50.0 5.21e-01 100.0% 94.9%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 50.0 4.87e-01 100.0% 80.0%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 50.0 4.74e-01 100.0% 74.7%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.61 50.0 5.15e-01 100.0% 96.6%
3401198 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 51.0 4.65e-01 98.4% 74.4%
4974839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.01e-01 100.0% 97.3%
3679362 4.1.1.351 beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.60 52.0 4.75e-01 100.0% 100.0%
3761318 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.60 48.0 4.69e-01 100.0% 81.4%
4844109 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 42.0 4.14e-01 95.2% 67.6%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.60 48.0 3.11e-01 100.0% 20.0%
3636807 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.59 52.0 3.41e-01 100.0% 35.4%
3598520 75.1.1.0 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.59 50.0 3.55e-01 100.0% 96.8%
4217523 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 50.0 4.04e-01 100.0% 48.0%
3813762 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.59 48.0 4.78e-01 95.2% 90.8%
3754343 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.59 46.0 4.44e-01 96.8% 74.7%
3961371 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 47.0 4.35e-01 100.0% 70.0%
3481770 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.58 48.0 4.49e-01 100.0% 72.5%
3912956 4.1.1.56 beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.58 50.0 4.14e-01 100.0% 70.0%
3593803 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 50.0 3.66e-01 100.0% 94.4%
3722339 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 49.0 3.81e-01 100.0% 80.7%
3821082 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 43.0 3.82e-01 100.0% 54.7%
3879164 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.57 47.0 4.48e-01 96.8% 78.7%
3025579 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 48.0 4.87e-01 100.0% 100.0%
3899014 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.57 49.0 3.40e-01 100.0% 28.0%
3177726 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 48.0 3.53e-01 100.0% 52.4%
4189805 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.56 49.0 3.65e-01 100.0% 75.2%
3538619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.82e-01 100.0% 75.4%
3900957 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 47.0 3.83e-01 100.0% 66.9%
4596124 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.55 47.0 3.55e-01 98.4% 93.3%
3794445 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 47.0 4.39e-01 100.0% 77.5%
3575435 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 46.0 4.06e-01 95.2% 63.2%
4072296 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.54 48.0 3.08e-01 100.0% 43.3%
4582465 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 45.0 3.86e-01 100.0% 82.7%
2171578 1.2.1.2 beta barrels › cradle loop barrel › Capsid protein protrusion (P) domain › Capsid protein protrusion (P) domain › Calici_coat_C 0.53 43.0 3.48e-01 100.0% 43.8%
3787702 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.52 43.0 3.41e-01 100.0% 94.8%
4963012 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.52 43.0 3.75e-01 100.0% 90.5%
4020073 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 42.0 4.15e-01 100.0% 84.3%
3964082 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 46.0 3.53e-01 100.0% 97.1%
3462526 2492.1.1.11 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.51 35.0 2.58e-01 74.6% 97.6%
4203446 1.1.5.57 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Mycop_pep_DUF31 0.51 41.0 2.56e-01 100.0% 13.8%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.51 43.0 3.32e-01 100.0% 97.4%
2648304 11.1.1.158 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GldM_4th 0.50 39.0 3.26e-01 87.3% 65.5%
2770396 1.1.13.8 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CoV_NSP9 0.50 42.0 3.46e-01 100.0% 96.9%
5023597 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 42.0 3.14e-01 98.4% 36.9%