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KJ617393.1AID18049.1X__00006

Bact-Vir

KJ617393.1__AID18049.1__X__00006

Identity

Accession:: KJ617393 ↗
Kingdom:: phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Madridviridae› Cepunavirus› Streptococcus_phage_SOCP

TaxID: 1498213

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 148-201

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	52.3	6.40e-14	100.0%	11.8%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3rkoG00	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.82	56.0	4.46e-01	70.4%	54.0%
7eu3E01	1.10.287.3510	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.81	55.0	4.59e-01	70.4%	63.2%
6k6iA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.77	59.0	3.88e-01	83.3%	57.5%
7cj3A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.75	56.0	3.60e-01	81.5%	48.8%
3uo2B02	1.20.1280.20	Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain	0.70	47.0	4.10e-01	70.4%	45.2%
3e98B00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.70	48.0	3.32e-01	72.2%	63.8%
4mudC00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.69	49.0	3.26e-01	75.9%	48.6%
4wpeA00	1.20.1270.60	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain	0.68	46.0	2.96e-01	72.2%	60.7%
1zu2A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.66	45.0	3.28e-01	72.2%	31.6%
3c1oA02	3.90.25.10	Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1	0.66	49.0	3.68e-01	79.6%	63.6%
2h1jA00	1.10.1370.30	Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 ›	0.64	50.0	2.89e-01	88.9%	89.2%
3no6A00	1.20.910.10	Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like	0.64	44.0	2.90e-01	72.2%	54.5%
3txsC01	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.60	41.0	3.78e-01	74.1%	81.3%
1dbhA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.54	38.0	2.73e-01	81.5%	78.7%
2crbA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.54	36.0	3.14e-01	72.2%	61.9%
5ux1D00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	38.0	2.68e-01	81.5%	87.3%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4243506	4970.1.1.3 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2	0.84	72.0	6.21e-01	92.6%	86.3%
3582652	4970.1.1.3 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2	0.83	70.0	5.91e-01	90.7%	77.6%
5055939	150.1.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin	0.80	54.0	3.76e-01	70.4%	38.2%
3175254	601.25.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical	0.76	51.0	3.60e-01	70.4%	27.3%
4441542	601.25.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical	0.76	52.0	3.69e-01	72.2%	28.1%
3513144	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.73	49.0	2.91e-01	70.4%	22.7%
3715687	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.72	59.0	3.76e-01	90.7%	85.2%
3215342	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.70	48.0	4.01e-01	72.2%	98.9%
4672624	601.25.1.1 ↗	alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical	0.68	49.0	3.43e-01	75.9%	43.4%
3178088	109.4.1.22 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N	0.66	44.0	2.89e-01	70.4%	16.0%
3627403	109.4.1.1255 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1	0.65	49.0	2.87e-01	79.6%	13.6%
3527193	11.1.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3	0.63	43.0	2.75e-01	72.2%	16.9%
3776284	109.4.1.1255 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1	0.63	50.0	2.82e-01	88.9%	11.6%
3598864	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	55.0	3.17e-01	100.0%	22.8%
1178517	5039.1.1.1 ↗	alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3	0.62	43.0	2.83e-01	72.2%	50.6%
3886866	261.1.1.1 ↗	a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT	0.55	39.0	2.45e-01	79.6%	14.8%
5078760	109.4.1.207 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2	0.53	43.0	2.96e-01	100.0%	73.5%
3696337	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	35.0	2.23e-01	72.2%	11.1%

D2 medium residues 1-38_202-289

PDB

Domain cluster: rep: NC_004735.1__NP_835679.1__Rm378p092__00092__D1-33_185-289

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	30.2	3.10e-07	31.8%	7.9%

D3 medium residues 39-146

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03175.19 best	DNA_pol_B_2	49.1	5.90e-13	100.0%	22.2%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2py5A03	3.30.1770.10	Alpha Beta › 2-Layer Sandwich › TPR 1 domain of DNA polymerase › TPR 1 domain of DNA polymerase	0.93	75.0	8.21e-01	93.5%	98.9%
5yl1A01	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	42.0	3.61e-01	87.0%	99.4%
5ewnA01	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	42.0	3.55e-01	87.0%	96.2%
5mc9A02	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	37.0	3.20e-01	76.9%	98.9%
1gnyA00	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.50	41.0	3.69e-01	88.9%	98.7%
5vn6A00	3.60.130.10	Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like	0.50	39.0	2.94e-01	84.3%	77.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
86600	4968.1.1.1 ↗	a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2	0.92	75.0	8.24e-01	93.5%	100.0%
3506687	304.48.1.17 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2	0.90	87.0	5.54e-01	100.0%	30.5%
4182877	4968.1.1.1 ↗	a+b complex topology › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › insertion domain in bacteriophage phi29 DNA polymerase › DNA_pol_B_2	0.76	60.0	6.20e-01	92.6%	89.0%

D4 medium residues 290-354

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ke7B00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	38.0	3.11e-01	78.5%	82.0%
1vwxT01	2.30.30.70	Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21	0.53	39.0	3.43e-01	80.0%	67.0%
3h6qA00	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.53	36.0	2.74e-01	81.5%	28.0%
3vwoA02	2.10.70.40	Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase	0.52	36.0	3.96e-01	72.3%	100.0%
4e98C00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	37.0	3.14e-01	75.4%	76.2%
2j3xA01	3.90.176.10	Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1	0.51	36.0	2.61e-01	76.9%	52.3%
1xmxA02	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.51	37.0	2.91e-01	80.0%	67.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3506687	304.48.1.17 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2	0.88	75.0	4.42e-01	90.8%	22.8%