←Back to structures

KJ628499.1__AJK27187.1__phiAbaA1_084__00084

Bact-Vir

KJ628499.1__AJK27187.1__phiAbaA1_084__00084

Identity

Accession:
KJ628499 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saclayvirus› Acinetobacter_phage_vB_AbaM_phiAbaA1

TaxID: 1605379

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-85
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kbgA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.81 50.0 5.00e-01 98.8% 61.7%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 53.0 4.82e-01 73.8% 76.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 5.44e-01 77.5% 85.9%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.95e-01 93.8% 77.3%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 4.14e-01 75.0% 53.0%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.12e-01 75.0% 86.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.93e-01 77.5% 84.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.28e-01 75.0% 93.5%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.67 49.0 4.47e-01 76.2% 74.0%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.04e-01 77.5% 85.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 49.0 5.09e-01 80.0% 84.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.66 49.0 5.10e-01 77.5% 97.3%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 45.0 4.09e-01 72.5% 63.3%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.65 52.0 4.54e-01 87.5% 73.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 5.19e-01 77.5% 98.5%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.61 52.0 4.48e-01 93.8% 72.4%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.61 43.0 4.47e-01 75.0% 92.1%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 3.75e-01 81.2% 53.6%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 46.0 4.28e-01 82.5% 73.5%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 50.0 4.60e-01 92.5% 71.2%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 41.0 4.36e-01 77.5% 85.7%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.86e-01 100.0% 81.0%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.81e-01 100.0% 83.2%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.67e-01 81.2% 68.1%
8b0qA01 3.30.420.340 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain 0.52 41.0 3.23e-01 86.3% 74.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973263 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.81 49.0 4.70e-01 97.5% 54.4%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 52.0 5.28e-01 78.8% 67.5%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 55.0 6.12e-01 75.0% 95.4%
3546727 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 55.0 4.93e-01 75.0% 74.1%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.67e-01 72.5% 97.1%
4644007 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.75 51.0 5.90e-01 76.2% 96.6%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.37e-01 85.0% 72.4%
3595651 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.71 51.0 4.44e-01 75.0% 58.3%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 52.0 5.74e-01 80.0% 93.8%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.21e-01 73.8% 96.0%
3848399 4.8.1.24 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.70 51.0 5.42e-01 75.0% 88.6%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 51.0 5.43e-01 77.5% 98.6%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.69 51.0 4.40e-01 77.5% 63.3%
3189521 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 50.0 4.90e-01 76.2% 90.6%
3720660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.98e-01 93.8% 78.7%
577 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 49.0 3.89e-01 76.2% 46.9%
3218475 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.68 49.0 4.21e-01 75.0% 55.8%
3961706 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.68 43.0 4.75e-01 91.3% 80.0%
4045576 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.68 47.0 5.14e-01 72.5% 93.8%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.28e-01 75.0% 59.1%
4042581 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.67 47.0 3.74e-01 72.5% 96.1%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.66e-01 97.5% 95.7%
3373105 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.67 49.0 4.90e-01 76.2% 82.5%
3699364 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 49.0 5.13e-01 77.5% 96.0%
3917043 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.66 49.0 3.71e-01 76.2% 41.7%
4013406 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.14e-01 78.8% 100.0%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 48.0 4.87e-01 77.5% 91.3%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.64 48.0 4.92e-01 97.5% 82.9%
26065 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 47.0 4.23e-01 77.5% 66.1%
4931113 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 53.0 4.74e-01 90.0% 72.7%
578 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 47.0 3.94e-01 77.5% 54.7%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 54.0 5.60e-01 97.5% 97.3%
3487371 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 53.0 5.04e-01 93.8% 80.0%
3177469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 5.14e-01 97.5% 97.1%
3924122 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 40.0 2.66e-01 88.7% 16.4%
3791777 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 54.0 5.31e-01 98.8% 94.1%
5036729 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 50.0 4.36e-01 93.8% 75.0%
1557343 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 41.0 4.36e-01 77.5% 85.7%
3555838 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 53.0 5.06e-01 100.0% 87.8%
3585186 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.57 29.0 3.60e-01 98.8% 100.0%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 51.0 4.21e-01 100.0% 97.1%
4381437 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.56 41.0 3.13e-01 78.8% 86.8%
4021395 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 47.0 3.11e-01 93.8% 24.9%
1684916 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 47.0 3.86e-01 100.0% 81.0%
4371406 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.52 40.0 3.23e-01 86.3% 70.9%
None — 0.52 41.0 2.71e-01 83.7% 27.5%
3629205 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.51 44.0 2.95e-01 100.0% 38.6%
5016827 5090.1.1.11 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S_layer_N 0.51 39.0 3.43e-01 81.2% 67.2%
3770448 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 40.0 3.19e-01 87.5% 91.2%
5040814 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.50 44.0 3.94e-01 97.5% 84.3%
3100772 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.50 35.0 3.43e-01 71.2% 68.6%
4945010 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 43.0 2.94e-01 100.0% 97.3%
3224838 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 40.0 2.61e-01 83.7% 27.0%
3583879 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 39.0 2.64e-01 83.7% 27.7%
3937102 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 38.0 2.91e-01 80.0% 45.6%
3239846 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 39.0 2.65e-01 83.7% 29.2%
3932471 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.50 39.0 2.57e-01 83.7% 23.5%