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KJ743987.1__AII27771.1__phiLM21_p019__00019

Bact-Vir

KJ743987.1__AII27771.1__phiLM21_p019__00019

Identity

Accession:
KJ743987 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_phiLM21

TaxID: 1524882

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-59
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.91 74.0 7.87e-01 96.6% 100.0%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.89 74.0 6.98e-01 100.0% 75.7%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.88 74.0 7.09e-01 100.0% 80.3%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.86 71.0 6.76e-01 100.0% 76.8%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.86 71.0 6.98e-01 100.0% 82.5%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.86 71.0 6.22e-01 100.0% 62.4%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.85 72.0 6.32e-01 100.0% 64.3%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 70.0 6.38e-01 100.0% 68.8%
4jcyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 74.0 6.34e-01 100.0% 62.0%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 68.0 6.53e-01 100.0% 77.6%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 71.0 6.30e-01 100.0% 65.5%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 70.0 5.74e-01 100.0% 52.4%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.83 68.0 6.22e-01 100.0% 68.8%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.82 67.0 5.30e-01 96.6% 45.2%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 67.0 6.52e-01 100.0% 80.3%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 67.0 6.36e-01 100.0% 75.7%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 66.0 6.24e-01 100.0% 75.4%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.80 65.0 6.24e-01 100.0% 77.9%
7n1nB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.80 66.0 6.49e-01 100.0% 85.7%
1au7A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 69.0 6.52e-01 100.0% 90.3%
2ewtA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.79 66.0 6.20e-01 100.0% 77.5%
1s4kA00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.79 73.0 5.63e-01 100.0% 84.2%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 63.0 5.90e-01 100.0% 70.7%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 68.0 6.41e-01 100.0% 84.9%
7zcvA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 60.0 5.93e-01 98.3% 81.0%
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 62.0 6.20e-01 96.6% 88.5%
3fmyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 66.0 6.33e-01 98.3% 89.4%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.67 47.0 3.86e-01 74.6% 86.5%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 43.0 4.27e-01 98.3% 62.5%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.65 50.0 3.83e-01 94.9% 35.2%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 42.0 4.47e-01 71.2% 82.0%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.65e-01 72.9% 60.2%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.70e-01 76.3% 98.8%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 41.0 4.22e-01 100.0% 86.8%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.54 38.0 2.81e-01 78.0% 25.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 37.0 3.07e-01 76.3% 78.9%
2h09A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.50 36.0 3.70e-01 81.4% 82.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949869 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.95 81.0 7.61e-01 100.0% 75.7%
3960854 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.94 80.0 7.17e-01 100.0% 67.9%
169605 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.90 79.0 6.81e-01 100.0% 64.7%
3587838 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.87 72.0 6.82e-01 100.0% 75.7%
2581392 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.86 71.0 6.66e-01 100.0% 74.6%
3589590 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.85 70.0 7.03e-01 100.0% 88.3%
4031838 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.82 72.0 6.50e-01 96.6% 75.0%
3518121 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.82 72.0 5.80e-01 100.0% 56.5%
363971 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.81 72.0 6.38e-01 100.0% 75.6%
3472710 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.81 72.0 5.79e-01 100.0% 61.7%
3985012 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.81 64.0 5.92e-01 100.0% 68.0%
5053876 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.80 62.0 6.21e-01 98.3% 83.3%
5012960 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.79 70.0 6.10e-01 100.0% 66.7%
160875 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.79 66.0 6.20e-01 100.0% 77.5%
4034164 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 69.0 5.44e-01 100.0% 49.6%
2780 101.1.4.10 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1870 0.79 73.0 5.63e-01 100.0% 84.2%
3518133 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.79 69.0 6.14e-01 100.0% 77.6%
3988890 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.78 55.0 6.16e-01 76.3% 97.8%
4971248 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.78 67.0 6.36e-01 100.0% 80.0%
3770218 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.78 68.0 5.70e-01 100.0% 67.0%
4940014 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 69.0 6.38e-01 100.0% 77.3%
2627770 101.1.4.1 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.76 67.0 6.40e-01 100.0% 91.2%
1867991 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 66.0 6.02e-01 100.0% 77.5%
3587618 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 58.0 5.17e-01 100.0% 68.2%
3829115 101.1.1.270 ↗ alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.64 44.0 4.28e-01 71.2% 64.6%
5029463 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.85e-01 78.0% 96.4%
5013811 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 45.0 4.65e-01 78.0% 81.8%
4958195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.42e-01 71.2% 76.4%
3312794 101.1.3.22 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 0.63 43.0 4.00e-01 71.2% 56.0%
3334461 101.1.1.270 ↗ alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 0.62 42.0 3.95e-01 71.2% 56.0%
3702894 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.59 38.0 4.04e-01 100.0% 76.0%
5041914 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.58 43.0 2.67e-01 79.7% 25.9%
4277451 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.56 38.0 2.57e-01 71.2% 91.1%
3280977 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.54 38.0 3.11e-01 76.3% 80.0%
3924840 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.54 36.0 3.74e-01 71.2% 76.4%
3840125 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 3.72e-01 100.0% 52.4%
3394510 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.54 47.0 4.29e-01 100.0% 73.8%
4884083 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.52 38.0 3.13e-01 78.0% 86.8%
3417768 129.1.1.16 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_binding_11 0.52 39.0 3.20e-01 86.4% 76.9%
4432304 3390.1.1.0 ↗ extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT 0.52 34.0 3.65e-01 78.0% 80.0%
3267034 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 34.0 3.58e-01 71.2% 82.0%
D2 high residues 85-224
PDB
Domain cluster: rep: MK448705.1__QBX15854.1__Javan215_0051__00005__D138-257
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00717.29 best Peptidase_S24 29.0 1.10e-06 96.4% 96.5%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 33.0 3.79e-01 92.1% 69.3%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.54 26.0 3.68e-01 75.0% 98.5%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.54 46.0 3.82e-01 92.9% 90.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949773 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.80 51.0 5.05e-01 75.7% 62.1%
3164339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.78 71.0 6.85e-01 100.0% 86.4%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.77 52.0 6.24e-01 73.6% 100.0%
3481729 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.76 53.0 5.73e-01 71.4% 95.8%
3301326 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.76 55.0 4.88e-01 75.0% 62.1%
5035321 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.75 55.0 5.33e-01 75.7% 94.2%
3667393 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.75 54.0 5.07e-01 75.0% 84.7%
4252291 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 55.0 4.95e-01 75.0% 85.0%
3240069 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 54.0 5.42e-01 75.0% 82.1%
4990503 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.72 53.0 5.57e-01 75.0% 87.2%
4303959 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.70 52.0 5.05e-01 76.4% 95.5%
4214117 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 54.0 4.62e-01 84.3% 95.2%
3967548 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.65 54.0 4.98e-01 86.4% 83.9%
153248 219.1.1.40 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AmiA-like 0.52 45.0 3.75e-01 92.1% 91.9%