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KJ743987.1__AII27785.1__phiLM21_p033__00033

Bact-Vir

KJ743987.1__AII27785.1__phiLM21_p033__00033

Identity

Accession:
KJ743987 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_phiLM21

TaxID: 1524882

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-103
PDB
Domain cluster: rep: MW273922.1__QPZ53454.1__HTVC034P_gp20__00020__D68-159
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08299.18 best Bac_DnaA_C 44.8 1.50e-11 81.1% 84.1%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.92 86.0 7.48e-01 100.0% 70.1%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.92 86.0 7.84e-01 100.0% 79.8%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 56.0 5.98e-01 83.8% 72.3%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.87 54.0 5.90e-01 83.8% 74.6%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 55.0 6.44e-01 91.9% 90.7%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 53.0 5.95e-01 83.8% 78.3%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 57.0 6.67e-01 73.0% 96.3%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.83 55.0 4.83e-01 70.3% 46.8%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.79 50.0 4.04e-01 85.1% 35.9%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 44.0 5.26e-01 71.6% 100.0%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 53.0 4.70e-01 100.0% 54.1%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 59.0 4.28e-01 94.6% 60.1%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.69 64.0 5.06e-01 100.0% 91.5%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.69 62.0 5.18e-01 100.0% 90.4%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 3.68e-01 71.6% 41.1%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.78e-01 89.2% 80.3%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.65 57.0 4.54e-01 95.9% 66.2%
3nnrA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 49.0 3.60e-01 82.4% 56.9%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.65e-01 77.0% 40.5%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.63 54.0 4.61e-01 95.9% 99.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 53.0 4.38e-01 97.3% 90.2%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 54.0 5.17e-01 100.0% 88.4%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.64e-01 75.7% 47.6%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 51.0 3.51e-01 95.9% 93.8%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.59 52.0 4.57e-01 100.0% 76.4%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 45.0 3.99e-01 91.9% 56.2%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.46e-01 87.8% 39.1%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 51.0 4.57e-01 98.6% 83.5%
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 45.0 3.64e-01 86.5% 45.8%
4b7hA03 1.20.1370.60 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › 0.56 48.0 4.25e-01 100.0% 66.1%
2n5fA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 48.0 4.08e-01 95.9% 78.9%
5k7fA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 49.0 4.01e-01 98.6% 82.6%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 46.0 3.77e-01 100.0% 87.0%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 47.0 3.93e-01 98.6% 81.8%
2ddhA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 46.0 3.82e-01 100.0% 53.0%
8ai9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 41.0 3.75e-01 85.1% 81.7%
5u56A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 44.0 3.93e-01 94.6% 78.6%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 40.0 2.84e-01 90.5% 33.3%
3lsjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 43.0 3.52e-01 100.0% 71.2%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4106860 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.95 90.0 8.15e-01 100.0% 78.9%
4165809 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 88.0 8.35e-01 98.6% 85.9%
4533441 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 89.0 8.07e-01 100.0% 77.9%
4197050 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 89.0 7.73e-01 100.0% 70.5%
4067934 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.94 89.0 8.20e-01 100.0% 83.3%
4347676 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 87.0 8.06e-01 98.6% 81.1%
4604979 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 88.0 7.70e-01 100.0% 73.1%
4529157 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 86.0 8.00e-01 98.6% 81.1%
4346134 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 88.0 7.66e-01 100.0% 72.1%
4437729 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 87.0 7.70e-01 100.0% 74.0%
4102935 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 86.0 7.54e-01 100.0% 71.4%
4281674 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 86.0 7.53e-01 100.0% 70.5%
4125972 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 86.0 7.64e-01 100.0% 75.0%
4270831 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 86.0 7.49e-01 100.0% 71.4%
4601417 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 86.0 7.76e-01 100.0% 78.9%
4559046 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 85.0 7.41e-01 100.0% 71.4%
4146099 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 85.0 7.72e-01 100.0% 77.9%
4606105 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 85.0 7.54e-01 100.0% 75.0%
4606821 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 84.0 7.50e-01 100.0% 74.0%
4524648 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 85.0 7.38e-01 100.0% 73.3%
4449691 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 64.0 6.94e-01 74.3% 87.3%
144712 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 85.0 7.31e-01 100.0% 72.0%
4051624 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 84.0 7.32e-01 100.0% 71.4%
3385990 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 83.0 7.25e-01 100.0% 71.4%
4266587 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 82.0 7.50e-01 100.0% 77.9%
4174198 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 82.0 7.36e-01 100.0% 75.0%
4379676 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 81.0 7.14e-01 100.0% 71.4%
3512259 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.85 78.0 6.87e-01 100.0% 81.9%
4174590 101.1.2.61 ↗ alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.84 59.0 6.30e-01 75.7% 83.1%
4958294 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 60.0 6.52e-01 95.9% 98.3%
4595970 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 60.0 6.52e-01 97.3% 98.3%
3963064 101.1.1.251 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.76 57.0 5.12e-01 98.6% 58.0%
3670113 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.76 64.0 5.91e-01 87.8% 98.9%
3985633 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.75 48.0 5.44e-01 70.3% 89.1%
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.74 47.0 4.61e-01 77.0% 60.0%
3380449 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.73 64.0 5.14e-01 91.9% 64.6%
3376425 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.73 62.0 5.89e-01 89.2% 81.2%
3448782 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.72 64.0 5.72e-01 94.6% 88.0%
4992527 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.72 46.0 4.48e-01 77.0% 60.0%
3333183 101.1.3.12 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.71 64.0 5.57e-01 94.6% 83.8%
3656429 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.71 65.0 4.59e-01 97.3% 43.4%
3452698 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.71 64.0 5.77e-01 94.6% 91.6%
4994133 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.71 45.0 4.35e-01 77.0% 56.5%
3314861 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.71 65.0 5.40e-01 97.3% 72.5%
4992556 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.70 45.0 3.98e-01 77.0% 45.7%
4992849 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.70 45.0 4.40e-01 77.0% 60.0%
4993165 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.70 45.0 4.12e-01 77.0% 50.5%
4966880 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.70 45.0 4.10e-01 77.0% 50.5%
3671163 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.70 64.0 5.50e-01 97.3% 80.9%
3445114 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.69 64.0 5.91e-01 97.3% 97.8%
3815501 101.1.10.37 ↗ alpha arrays › HTH › HTH › Cyclin-like › PF26138 0.69 64.0 5.82e-01 97.3% 94.7%
3452676 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.69 64.0 5.76e-01 97.3% 91.6%
3685911 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 63.0 5.74e-01 98.6% 80.0%
3907483 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 62.0 5.36e-01 97.3% 85.5%
5074942 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.68 41.0 4.13e-01 73.0% 60.0%
3989117 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.68 62.0 5.51e-01 97.3% 95.0%
3916395 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.68 61.0 5.31e-01 94.6% 78.1%
3819780 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.68 62.0 5.55e-01 98.6% 93.0%
3372955 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.68 62.0 5.10e-01 95.9% 66.7%
3301179 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.67 62.0 6.23e-01 100.0% 98.7%
3892817 101.1.1.129 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.67 61.0 5.66e-01 95.9% 93.3%
3828160 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 62.0 4.77e-01 100.0% 64.5%
5050966 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.66 42.0 3.91e-01 77.0% 50.5%
3913655 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 59.0 5.79e-01 94.6% 91.3%
3887530 101.1.10.41 ↗ alpha arrays › HTH › HTH › Cyclin-like › HTH_Tnp_4 0.66 61.0 5.65e-01 97.3% 93.3%
3883738 101.1.3.20 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_4 0.66 61.0 5.65e-01 97.3% 93.3%
5007495 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.66 59.0 4.87e-01 95.9% 82.4%
4989143 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 58.0 5.05e-01 95.9% 92.7%
5042483 101.1.6.38 ↗ alpha arrays › HTH › HTH › TrpR › Sigma70_r4 0.65 58.0 5.01e-01 95.9% 92.7%
3260056 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 58.0 5.22e-01 98.6% 82.0%
3256356 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 51.0 5.50e-01 98.6% 100.0%
5077693 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.63 40.0 3.91e-01 78.4% 56.5%
3793393 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.79e-01 89.2% 76.2%
5013438 101.1.2.881 ↗ alpha arrays › HTH › HTH › winged helix domain › UPF0175 0.63 48.0 5.20e-01 86.5% 100.0%
4970998 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.63 50.0 4.51e-01 85.1% 74.0%
4938759 101.1.8.14 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 0.62 44.0 4.94e-01 81.1% 100.0%
4927193 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 52.0 4.62e-01 100.0% 78.1%