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KJ743987.1__AII27798.1__phiLM21_p047__00046
Bact-VirKJ743987.1__AII27798.1__phiLM21_p047__00046
Identity
- Accession:
- KJ743987 ↗
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-97
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ke2A00 | 6.10.140.1860 | Special › Helix non-globular › Helix Hairpins › | 0.83 | 75.0 | 5.01e-01 | 100.0% | 54.1% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.82 | 73.0 | 5.07e-01 | 100.0% | 33.1% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.79 | 70.0 | 5.54e-01 | 100.0% | 51.4% |
| 4ev6A03 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.78 | 65.0 | 6.43e-01 | 92.7% | 98.3% |
| 2ficB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.76 | 67.0 | 4.55e-01 | 100.0% | 69.7% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.76 | 69.0 | 5.99e-01 | 100.0% | 98.8% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 69.0 | 5.23e-01 | 100.0% | 58.0% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.75 | 64.0 | 3.96e-01 | 96.4% | 25.8% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 64.0 | 6.37e-01 | 96.4% | 93.0% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.74 | 65.0 | 5.07e-01 | 100.0% | 46.6% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.74 | 56.0 | 4.83e-01 | 100.0% | 51.7% |
| 7tj9A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.74 | 58.0 | 4.57e-01 | 87.3% | 43.4% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 64.0 | 4.64e-01 | 100.0% | 36.3% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.72 | 54.0 | 4.56e-01 | 100.0% | 48.4% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 64.0 | 4.11e-01 | 96.4% | 22.5% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.72 | 64.0 | 5.86e-01 | 100.0% | 76.1% |
| 3q23A03 | 6.10.140.1360 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 65.0 | 5.89e-01 | 100.0% | 79.2% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 62.0 | 5.17e-01 | 100.0% | 56.7% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.70 | 54.0 | 4.64e-01 | 81.8% | 54.1% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.70 | 63.0 | 5.55e-01 | 100.0% | 73.4% |
| 4o5fA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 59.0 | 4.56e-01 | 96.4% | 69.3% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 59.0 | 5.67e-01 | 92.7% | 85.5% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 50.0 | 4.76e-01 | 80.0% | 68.7% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 62.0 | 5.67e-01 | 100.0% | 87.3% |
| 1xl3C00 | 1.20.1280.80 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.69 | 58.0 | 4.95e-01 | 96.4% | 61.5% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.68 | 59.0 | 5.33e-01 | 94.5% | 78.1% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.67 | 61.0 | 4.14e-01 | 100.0% | 40.4% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.66 | 56.0 | 4.39e-01 | 92.7% | 80.5% |
| 1v9dB00 | 1.20.58.2220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain | 0.66 | 58.0 | 3.60e-01 | 100.0% | 18.1% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.66 | 54.0 | 5.16e-01 | 100.0% | 91.4% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 50.0 | 3.68e-01 | 87.3% | 32.1% |
| 2h8aA00 | 1.20.120.550 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain | 0.65 | 51.0 | 4.07e-01 | 90.9% | 42.1% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.64 | 56.0 | 5.40e-01 | 100.0% | 90.5% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 57.0 | 4.64e-01 | 100.0% | 59.8% |
| 4gouA03 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.64 | 55.0 | 3.79e-01 | 100.0% | 72.6% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 55.0 | 4.02e-01 | 98.2% | 36.4% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.63 | 47.0 | 5.17e-01 | 96.4% | 97.8% |
| 1h6vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.63 | 54.0 | 3.58e-01 | 100.0% | 25.0% |
| 1onfA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 54.0 | 3.69e-01 | 100.0% | 27.5% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 46.0 | 4.48e-01 | 85.5% | 72.1% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.62 | 52.0 | 4.27e-01 | 94.5% | 57.4% |
| 3eayA01 | 1.10.418.20 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › | 0.60 | 50.0 | 3.94e-01 | 96.4% | 99.2% |
| 1xqrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 50.0 | 3.20e-01 | 94.5% | 19.5% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.53 | 43.0 | 4.16e-01 | 100.0% | 85.1% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4941821 | 853.1.1.0 ↗ | extended segments › Virulence effector SptP domain › Virulence effector SptP domain › Virulence effector SptP domain | 0.88 | 78.0 | 6.39e-01 | 96.4% | 60.0% |
| 4648753 | 605.1.1.278 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Attractin | 0.83 | 74.0 | 7.21e-01 | 98.2% | 93.3% |
| 3628497 | 4082.1.1.0 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain | 0.81 | 63.0 | 6.61e-01 | 90.9% | 92.0% |
| 4025741 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.81 | 73.0 | 4.99e-01 | 100.0% | 70.0% |
| 4217794 | 5086.1.1.94 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD | 0.81 | 73.0 | 5.52e-01 | 100.0% | 82.4% |
| 3298752 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.79 | 69.0 | 5.42e-01 | 98.2% | 48.7% |
| 3710397 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.78 | 67.0 | 5.26e-01 | 100.0% | 48.3% |
| 3634125 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.78 | 62.0 | 6.10e-01 | 100.0% | 81.7% |
| 3281424 | 3755.3.1.299 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF445 | 0.77 | 65.0 | 4.53e-01 | 92.7% | 33.5% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.77 | 66.0 | 5.08e-01 | 100.0% | 46.2% |
| 3886005 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.76 | 68.0 | 5.27e-01 | 98.2% | 47.8% |
| 3923563 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.76 | 67.0 | 4.93e-01 | 100.0% | 46.2% |
| 1144608 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.76 | 64.0 | 5.19e-01 | 100.0% | 49.1% |
| 5024245 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.76 | 68.0 | 5.36e-01 | 100.0% | 57.3% |
| 3580117 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.76 | 63.0 | 5.82e-01 | 98.2% | 80.0% |
| 3573038 | 4207.1.1.99 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF28139 | 0.75 | 64.0 | 5.55e-01 | 100.0% | 65.6% |
| 3973208 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 62.0 | 5.61e-01 | 100.0% | 69.3% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.74 | 64.0 | 6.18e-01 | 92.7% | 95.0% |
| 3592316 | 7014.1.1.0 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain | 0.74 | 65.0 | 3.98e-01 | 100.0% | 33.2% |
| 3277923 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.74 | 67.0 | 5.80e-01 | 100.0% | 77.1% |
| 5063587 | 611.9.1.0 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain | 0.74 | 61.0 | 5.44e-01 | 100.0% | 67.1% |
| 3353067 | 101.1.2.37 ↗ | alpha arrays › HTH › HTH › winged helix domain › E2F_TDP | 0.73 | 60.0 | 5.35e-01 | 90.9% | 65.0% |
| 3711247 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.73 | 62.0 | 3.88e-01 | 100.0% | 16.9% |
| 4010451 | 3788.1.1.15 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 | 0.73 | 58.0 | 5.13e-01 | 83.6% | 82.7% |
| 4938085 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.73 | 64.0 | 5.29e-01 | 96.4% | 62.1% |
| 4631890 | 109.4.1.1253 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Atp25_C | 0.73 | 57.0 | 3.55e-01 | 94.5% | 15.2% |
| 3579213 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.73 | 64.0 | 5.04e-01 | 96.4% | 73.6% |
| 3549590 | 3755.3.1.123 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tektin | 0.73 | 67.0 | 4.02e-01 | 100.0% | 22.4% |
| 3449084 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.72 | 64.0 | 5.12e-01 | 100.0% | 51.4% |
| 4132296 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.72 | 61.0 | 5.90e-01 | 90.9% | 91.7% |
| 3650275 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.72 | 60.0 | 5.41e-01 | 92.7% | 66.7% |
| 3770414 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 64.0 | 5.15e-01 | 100.0% | 62.9% |
| 3518386 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.71 | 63.0 | 5.68e-01 | 100.0% | 72.0% |
| 4033482 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 64.0 | 5.37e-01 | 100.0% | 64.4% |
| 3208329 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.71 | 54.0 | 4.67e-01 | 90.9% | 52.2% |
| 3659915 | 192.7.1.45 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp | 0.70 | 59.0 | 5.41e-01 | 98.2% | 77.3% |
| 4527464 | 633.24.1.5 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › PF29080 | 0.69 | 55.0 | 4.71e-01 | 94.5% | 52.6% |
| 3178900 | 192.2.1.30 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 | 0.69 | 62.0 | 4.51e-01 | 100.0% | 42.1% |
| 5049657 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.68 | 54.0 | 3.47e-01 | 87.3% | 17.8% |
| 4881805 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.68 | 59.0 | 5.22e-01 | 100.0% | 98.8% |
| 4014485 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.67 | 52.0 | 4.26e-01 | 81.8% | 65.3% |
| 3731535 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.67 | 52.0 | 4.21e-01 | 81.8% | 65.0% |
| 4889303 | 10.13.1.3 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › PhoLip_ATPase_N | 0.65 | 57.0 | 3.70e-01 | 100.0% | 29.1% |
| 4545543 | 517.2.1.1 ↗ | beta barrels › CBF-like › TraF › TraF › TrbI | 0.64 | 54.0 | 3.75e-01 | 100.0% | 28.1% |
| 4069818 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.63 | 50.0 | 3.37e-01 | 100.0% | 22.2% |