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KJ746502.1__AID18346.1__PPF1_33__00033

Bact-Vir

KJ746502.1__AID18346.1__PPF1_33__00033

Identity

Accession:
KJ746502 ↗
Kingdom:
phage

Quality

97.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_vB_RleM_PPF1

TaxID: 1498228

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-173
PDB
Domain cluster: rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01510.31 best Amidase_2 40.9 3.40e-10 85.0% 89.1%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yb0B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.80 66.0 6.64e-01 100.0% 85.5%
3rdrA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.78 63.0 6.49e-01 98.8% 86.9%
1aroL00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.77 62.0 6.46e-01 98.1% 89.3%
6su5A01 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.75 60.0 6.18e-01 100.0% 86.8%
2bh7A02 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.74 67.0 6.88e-01 99.4% 98.7%
5xz3B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.73 62.0 6.10e-01 97.5% 83.9%
4olsA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.72 69.0 6.52e-01 100.0% 88.6%
1ohtA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.72 61.0 5.98e-01 97.5% 82.1%
2eaxA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.72 61.0 6.06e-01 97.5% 86.0%
2xz8A00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.69 48.0 5.20e-01 85.0% 83.7%
2y28B00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.69 62.0 6.00e-01 98.1% 85.9%
2afcA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.57 44.0 4.55e-01 100.0% 85.0%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.57 35.0 4.22e-01 78.1% 93.3%
7xjrA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 37.0 3.12e-01 99.4% 39.2%
1tvkA02 3.30.1330.20 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain 0.52 30.0 3.43e-01 81.2% 76.5%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.50 37.0 3.95e-01 93.8% 87.8%
4f55A01 1.10.10.2520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cell wall hydrolase SleB, domain 1 0.50 26.0 3.40e-01 98.1% 93.8%
2hc9A02 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 43.0 3.40e-01 93.1% 80.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2845647 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.81 64.0 6.61e-01 100.0% 85.0%
3953294 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.76 68.0 6.45e-01 100.0% 80.5%
4088805 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 64.0 6.05e-01 99.4% 76.8%
4265814 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.75 67.0 6.62e-01 98.1% 89.7%
1891396 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.74 67.0 6.45e-01 99.4% 86.3%
3897241 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.73 62.0 6.28e-01 98.8% 88.7%
4031908 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.73 70.0 6.52e-01 100.0% 85.2%
4291672 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.73 61.0 6.12e-01 97.5% 85.5%
4837356 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.73 65.0 6.56e-01 94.4% 94.3%
3389811 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.72 61.0 5.89e-01 97.5% 80.6%
3416111 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.71 61.0 5.95e-01 97.5% 83.5%
4034532 285.1.1.0 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like 0.71 61.0 6.17e-01 100.0% 90.0%
4429159 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.70 61.0 4.41e-01 97.5% 36.1%
3873499 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.70 50.0 5.40e-01 75.0% 83.6%
3910569 285.1.1.1 ↗ a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 0.70 61.0 5.75e-01 97.5% 78.4%
4029642 7579.1.1.73 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF900 0.55 45.0 3.60e-01 86.9% 53.2%