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KJ746502.1__AID18354.1__PPF1_41__00041

Bact-Vir

KJ746502.1__AID18354.1__PPF1_41__00041

Identity

Accession:
KJ746502 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-90
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.67 57.0 4.46e-01 96.3% 98.4%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 48.0 5.00e-01 80.2% 91.9%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 53.0 4.50e-01 100.0% 78.8%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.61 45.0 4.21e-01 76.5% 65.3%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 47.0 3.40e-01 85.2% 90.4%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 37.0 3.67e-01 72.8% 61.4%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 47.0 4.23e-01 87.7% 69.3%
7vbnL01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.58 40.0 3.85e-01 71.6% 75.8%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 48.0 4.38e-01 93.8% 71.9%
4nxyA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 42.0 3.35e-01 76.5% 89.2%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 45.0 3.28e-01 85.2% 90.2%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 42.0 3.28e-01 81.5% 35.2%
5jtfB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 3.36e-01 79.0% 95.4%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 43.0 3.58e-01 80.2% 50.3%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 43.0 3.49e-01 84.0% 98.3%
1ajqB01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 50.0 3.44e-01 100.0% 59.6%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 48.0 4.02e-01 92.6% 82.5%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 4.01e-01 91.4% 84.3%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.43e-01 72.8% 55.6%
2wsaA00 3.40.630.170 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › 0.56 41.0 2.73e-01 81.5% 33.3%
3cmbA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.56 45.0 3.20e-01 88.9% 79.2%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.42e-01 72.8% 52.5%
1n71B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 40.0 3.21e-01 79.0% 54.7%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 40.0 3.64e-01 80.2% 89.2%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 3.28e-01 77.8% 67.1%
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.32e-01 70.4% 49.6%
3t9yA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.55e-01 81.5% 79.1%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 40.0 3.76e-01 85.2% 61.8%
3ld2B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.35e-01 80.2% 97.5%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 49.0 3.55e-01 100.0% 39.4%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 3.38e-01 87.7% 82.5%
2jdcA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 40.0 3.41e-01 80.2% 65.5%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.54 40.0 3.94e-01 84.0% 70.8%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.97e-01 97.5% 78.5%
3iwgA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 3.66e-01 90.1% 81.9%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.38e-01 82.7% 63.5%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.93e-01 97.5% 78.8%
2ba1D01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.52 44.0 3.32e-01 100.0% 66.5%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 37.0 3.89e-01 76.5% 83.6%
3blnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.49e-01 88.9% 78.9%
1y9kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 36.0 3.29e-01 74.1% 54.9%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 38.0 3.17e-01 81.5% 47.5%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.39e-01 90.1% 89.4%
3h4qA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 42.0 3.49e-01 90.1% 84.1%
3l4jA04 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.51 37.0 3.47e-01 77.8% 93.1%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.51 44.0 3.08e-01 98.8% 63.1%
3n7zA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.55e-01 90.1% 87.9%
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 44.0 3.41e-01 97.5% 71.4%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 2.84e-01 72.8% 76.8%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.50 31.0 3.48e-01 72.8% 87.7%
2ozhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 3.19e-01 79.0% 69.9%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 39.0 2.58e-01 86.4% 50.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027968 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 50.0 4.39e-01 79.0% 83.5%
3619073 2004.1.1.78 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP 0.64 57.0 4.38e-01 100.0% 92.4%
3790913 2004.1.1.78 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP 0.64 57.0 4.32e-01 100.0% 90.0%
4153442 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 55.0 4.87e-01 100.0% 89.2%
3815659 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.62 52.0 4.26e-01 93.8% 50.0%
3402026 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.62 49.0 3.05e-01 87.7% 29.3%
3947165 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 46.0 3.75e-01 80.2% 80.7%
3633078 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 40.0 3.44e-01 74.1% 43.2%
3713384 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.61 54.0 4.13e-01 96.3% 69.5%
1189179 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.60 49.0 3.75e-01 88.9% 39.9%
4025469 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.60 44.0 3.26e-01 77.8% 38.1%
3945891 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 45.0 3.70e-01 80.2% 68.7%
5053421 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 45.0 3.58e-01 80.2% 97.0%
3201410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 39.0 3.22e-01 72.8% 37.2%
3794338 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 40.0 3.99e-01 88.9% 67.1%
3199223 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 40.0 3.12e-01 70.4% 51.7%
3472532 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.41e-01 74.1% 52.4%
2801583 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.58 42.0 3.73e-01 77.8% 53.7%
3895602 5.1.4.102 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 0.57 48.0 3.23e-01 90.1% 50.8%
3395786 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 2.90e-01 84.0% 26.3%
5046458 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 49.0 3.80e-01 93.8% 61.1%
1544904 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.57 48.0 4.02e-01 92.6% 82.5%
3239059 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.56 48.0 4.24e-01 95.1% 94.2%
3272573 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.56 46.0 4.74e-01 91.4% 96.0%
3590145 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.55 45.0 3.56e-01 88.9% 87.9%
3681710 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.55 41.0 3.90e-01 77.8% 83.2%
3589490 4023.1.1.1 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.55 39.0 3.36e-01 75.3% 85.9%
1383195 213.1.1.29 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.55 40.0 3.58e-01 80.2% 80.2%
4958631 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 44.0 3.49e-01 85.2% 80.6%
409684 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 40.0 3.31e-01 80.2% 64.0%
3946418 6043.1.1.5 a+b two layers › yfeY-like › yfeY-like › yfeY-like › DUF6392 0.55 40.0 3.28e-01 76.5% 43.4%
3944465 809.1.1.7 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › DUF6392 0.54 40.0 3.95e-01 76.5% 74.1%
5073680 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.54 37.0 3.25e-01 71.6% 75.0%
4470389 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 39.0 3.16e-01 77.8% 65.9%
5009939 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.56e-01 76.5% 72.4%
3249982 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.53 47.0 3.98e-01 100.0% 94.1%
2462227 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.53 46.0 3.94e-01 97.5% 78.2%
3796820 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.53 32.0 3.24e-01 85.2% 57.6%
5004757 213.1.1.25 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.53 41.0 3.31e-01 90.1% 70.7%
4117857 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.53 37.0 3.47e-01 81.5% 58.1%
3820662 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 44.0 3.64e-01 97.5% 99.4%
5083360 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 38.0 3.20e-01 79.0% 66.7%
3940504 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.51 38.0 2.81e-01 79.0% 51.6%
4000304 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.51 35.0 3.89e-01 82.7% 96.7%
3991840 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.51 37.0 3.80e-01 86.4% 85.3%
3789660 897.1.1.0 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.51 41.0 3.22e-01 93.8% 67.2%
4259150 295.1.1.46 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.50 38.0 3.34e-01 85.2% 82.2%