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KJ746502.1__AID18371.1__PPF1_58__00058

Bact-Vir

KJ746502.1__AID18371.1__PPF1_58__00058

Identity

Accession:
KJ746502 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_vB_RleM_PPF1

TaxID: 1498228

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-160
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.78 49.0 6.17e-01 94.3% 100.0%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 31.0 4.52e-01 90.5% 100.0%
1r3eA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 35.0 4.63e-01 92.4% 91.7%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.66 30.0 4.43e-01 90.5% 97.1%
2kkuA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.62 50.0 5.32e-01 100.0% 95.7%
1sqwA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.62 33.0 4.38e-01 91.8% 96.4%
2ar1A00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.58 48.0 4.91e-01 100.0% 87.9%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.58 40.0 4.68e-01 90.5% 100.0%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 37.0 4.07e-01 93.0% 81.1%
1i2dA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.53 44.0 4.16e-01 93.0% 72.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030320 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.86 63.0 7.05e-01 100.0% 93.6%
3598242 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.83 65.0 6.78e-01 100.0% 87.6%
184578 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.83 65.0 6.65e-01 100.0% 83.8%
3934702 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.83 61.0 6.52e-01 100.0% 85.7%
3220176 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.82 66.0 6.79e-01 100.0% 87.3%
3375062 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.81 68.0 6.80e-01 100.0% 85.0%
4165251 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.80 33.0 5.09e-01 89.9% 93.8%
3619452 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 65.0 6.60e-01 100.0% 87.1%
2391027 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 65.0 6.50e-01 100.0% 88.8%
3208149 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.75 54.0 5.93e-01 100.0% 89.2%
4013185 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 54.0 5.57e-01 100.0% 80.0%
3894869 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.71 61.0 6.24e-01 100.0% 92.3%
5016521 1.1.9.7 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.71 55.0 5.99e-01 100.0% 94.1%
3199787 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 52.0 5.67e-01 100.0% 91.1%
4999514 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 61.0 6.24e-01 100.0% 97.3%
5079450 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.69 54.0 5.76e-01 100.0% 92.1%
4995643 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.67 55.0 5.74e-01 100.0% 92.4%
4945851 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 33.0 4.28e-01 91.1% 83.3%
4990496 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 47.0 5.40e-01 100.0% 99.1%
4970789 1.1.9.7 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.66 52.0 5.49e-01 100.0% 92.1%
4967745 1.1.9.56 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30793 0.66 42.0 4.97e-01 100.0% 92.7%
4155252 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.66 42.0 5.11e-01 89.9% 97.1%
5022429 1.1.9.35 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.65 47.0 5.26e-01 100.0% 94.4%
4014658 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 44.0 4.98e-01 100.0% 90.0%
3972039 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.64 49.0 5.30e-01 100.0% 92.6%
5070577 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.63 43.0 5.06e-01 89.2% 98.2%
4950776 1.1.9.7 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF365 0.63 52.0 5.47e-01 100.0% 96.4%
5023730 1.1.9.9 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.63 51.0 5.33e-01 98.1% 91.7%
4947239 1.1.7.140 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 0.60 38.0 4.66e-01 94.9% 100.0%
3948318 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 40.0 3.76e-01 94.9% 58.5%
3643932 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 27.0 3.62e-01 94.3% 97.6%
4948638 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.50 26.0 3.45e-01 74.7% 94.0%