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KJ801817.2__AII28473.1__X__00110

Bact-Vir

KJ801817.2__AII28473.1__X__00110

Identity

Accession:
KJ801817 ↗
Kingdom:
phage

Quality

71.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kochikohdavirus› Enterococcus_phage_ECP3

TaxID: 1498168

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: rep: NC_031022.1__YP_009280252.1__BI056_gp065__00065__D70-126
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.67 53.0 4.52e-01 88.7% 78.5%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 45.0 4.21e-01 71.0% 79.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 4.10e-01 71.0% 68.4%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.65 51.0 4.52e-01 88.7% 81.9%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 44.0 4.46e-01 71.0% 93.3%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.63 52.0 4.39e-01 100.0% 76.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 4.85e-01 71.0% 100.0%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 44.0 2.72e-01 74.2% 38.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 4.24e-01 79.0% 71.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 42.0 4.45e-01 71.0% 83.3%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.59e-01 71.0% 95.9%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 48.0 4.22e-01 88.7% 83.8%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 4.14e-01 72.6% 85.1%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.61 41.0 4.26e-01 71.0% 75.4%
3f8dA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 3.44e-01 74.2% 82.1%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 44.0 2.72e-01 79.0% 41.5%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 52.0 4.12e-01 98.4% 97.7%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.03e-01 79.0% 76.5%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.16e-01 72.6% 87.1%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 49.0 4.33e-01 96.8% 82.7%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.47e-01 80.6% 84.1%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.65e-01 77.4% 96.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.33e-01 82.3% 71.2%
2j3lA01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 50.0 4.19e-01 98.4% 72.6%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.59 43.0 4.63e-01 80.6% 92.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.33e-01 77.4% 91.5%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.58 43.0 3.85e-01 85.5% 64.3%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 4.13e-01 75.8% 84.1%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 3.99e-01 75.8% 80.0%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 3.71e-01 100.0% 64.7%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 4.17e-01 77.4% 93.4%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 2.54e-01 79.0% 41.5%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.73e-01 82.3% 60.8%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.20e-01 85.5% 78.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 38.0 3.76e-01 79.0% 65.2%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.43e-01 75.8% 59.6%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.87e-01 74.2% 81.5%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 4.07e-01 77.4% 94.8%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.58e-01 82.3% 57.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 4.00e-01 75.8% 96.6%
3pvlA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 3.87e-01 82.3% 98.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.51e-01 85.5% 96.4%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.32e-01 100.0% 51.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 3.97e-01 77.4% 93.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.54e-01 100.0% 67.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.80e-01 75.8% 90.2%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 37.0 2.44e-01 91.9% 14.7%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.11e-01 85.5% 89.2%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.81e-01 88.7% 88.6%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.63e-01 77.4% 80.0%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 41.0 3.63e-01 93.5% 70.3%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 3.60e-01 72.6% 85.9%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 3.09e-01 79.0% 91.7%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 40.0 3.46e-01 88.7% 60.0%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 41.0 2.71e-01 95.2% 24.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 44.0 3.79e-01 96.8% 79.2%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.64e-01 95.2% 23.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4562754 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.69 55.0 4.76e-01 88.7% 85.0%
3262212 7502.1.1.7 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.68 53.0 4.51e-01 88.7% 71.8%
4163844 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.68 54.0 4.74e-01 88.7% 82.1%
4564801 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 54.0 4.70e-01 88.7% 82.1%
3814411 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 48.0 4.03e-01 79.0% 54.3%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.65 48.0 3.90e-01 79.0% 53.0%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.29e-01 79.0% 74.1%
3180655 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 52.0 4.03e-01 96.8% 72.0%
3186839 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 3.17e-01 93.5% 33.0%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 45.0 3.90e-01 80.6% 72.0%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.61 48.0 4.89e-01 85.5% 90.0%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 45.0 4.46e-01 79.0% 92.3%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.60 45.0 4.26e-01 80.6% 74.7%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 42.0 4.26e-01 72.6% 90.0%
3475965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.65e-01 71.0% 97.8%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.60 50.0 4.62e-01 100.0% 96.5%
3672651 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 51.0 3.76e-01 100.0% 81.2%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 46.0 4.58e-01 85.5% 80.0%
4400911 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 35.0 4.03e-01 71.0% 92.5%
5025933 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.80e-01 80.6% 84.2%
5020812 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.57 43.0 4.09e-01 82.3% 89.3%
3305600 375.1.1.80 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Dof 0.56 34.0 4.03e-01 80.6% 92.5%
3175902 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 40.0 4.12e-01 79.0% 86.7%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.56 39.0 3.81e-01 74.2% 82.9%
1877308 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.55 43.0 3.99e-01 88.7% 86.7%
4963580 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.55 41.0 3.83e-01 80.6% 86.3%
4218525 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 4.08e-01 79.0% 89.2%
3253321 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 4.11e-01 80.6% 95.4%
3595832 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.55 29.0 3.11e-01 72.6% 56.4%
3932882 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.54 38.0 3.54e-01 75.8% 86.3%
3406047 2.1.1.81 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.54 38.0 3.22e-01 75.8% 82.9%
3495622 3246.1.1.3 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_2 0.53 37.0 3.53e-01 75.8% 64.0%
3592754 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 3.66e-01 100.0% 74.8%
5023930 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 38.0 3.56e-01 82.3% 67.1%
4050524 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 39.0 3.89e-01 80.6% 81.5%
4167626 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 38.0 3.76e-01 75.8% 81.5%
3688923 2.1.1.89 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.52 39.0 3.70e-01 79.0% 88.0%
4678731 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.52 39.0 3.84e-01 80.6% 81.5%
5043286 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 40.0 3.71e-01 88.7% 97.6%
4492101 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 38.0 3.41e-01 80.6% 84.4%
4582456 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 35.0 3.46e-01 72.6% 80.0%
5014689 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 40.0 4.05e-01 93.5% 96.7%
4250239 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 38.0 3.76e-01 80.6% 81.5%
4579534 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 35.0 3.54e-01 74.2% 83.1%
4184764 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.51 38.0 3.76e-01 80.6% 83.1%
3234330 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 39.0 3.35e-01 88.7% 58.2%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 37.0 3.86e-01 83.9% 100.0%
3510695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 39.0 3.67e-01 90.3% 82.5%
4425795 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.50 38.0 3.75e-01 80.6% 81.5%
3730005 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 37.0 2.52e-01 80.6% 35.5%
4119533 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.50 37.0 3.83e-01 80.6% 88.3%
D2 high residues 76-138
PDB
Domain cluster: rep: NC_031022.1__YP_009280252.1__BI056_gp065__00065__D70-126
D3 medium residues 140-206
PDB