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KJ801817.2__AII28521.1__X__00158

Bact-Vir

KJ801817.2__AII28521.1__X__00158

Identity

Accession:
KJ801817 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kochikohdavirus› Enterococcus_phage_ECP3

TaxID: 1498168

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-73
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.72 36.0 3.28e-01 94.6% 36.0%
2wadA01 6.20.70.10 Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 36.0 4.47e-01 96.4% 90.0%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 36.0 2.28e-01 96.4% 10.6%
2z1aA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.63 53.0 3.40e-01 100.0% 23.6%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.61 49.0 3.61e-01 91.1% 44.9%
1pvmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 45.0 3.23e-01 82.1% 55.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 39.0 3.66e-01 96.4% 57.6%
2bh8A02 6.20.370.20 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.58 30.0 3.69e-01 75.0% 71.9%
4egxD01 6.10.250.2520 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 32.0 3.09e-01 85.7% 46.3%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 40.0 3.24e-01 78.6% 46.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 47.0 2.98e-01 100.0% 29.0%
6k8nA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 3.06e-01 83.9% 60.8%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.55 46.0 3.42e-01 100.0% 94.4%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 45.0 2.96e-01 92.9% 39.0%
1xvwA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 42.0 3.15e-01 91.1% 88.0%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 3.15e-01 73.2% 77.6%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.53 44.0 2.57e-01 100.0% 34.1%
1wyuA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 40.0 2.69e-01 89.3% 22.9%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 3.62e-01 100.0% 75.4%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.86e-01 100.0% 22.9%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.70e-01 100.0% 41.6%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 36.0 3.87e-01 98.2% 89.1%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 37.0 3.50e-01 100.0% 63.2%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.80e-01 98.2% 72.7%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.51 40.0 3.06e-01 87.5% 91.0%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.51 39.0 2.48e-01 87.5% 40.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4381129 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.69 35.0 2.56e-01 94.6% 18.7%
5063297 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 36.0 3.38e-01 98.2% 38.6%
3974688 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.69 36.0 3.86e-01 98.2% 58.0%
5080113 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.67 37.0 3.39e-01 94.6% 41.3%
3364715 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.67 40.0 3.50e-01 98.2% 40.0%
3239336 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 32.0 4.03e-01 87.5% 88.0%
5055290 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.66 37.0 3.48e-01 98.2% 45.6%
3277661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 46.0 3.73e-01 75.0% 42.9%
4937838 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.63 53.0 3.69e-01 100.0% 41.8%
4996799 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.62 39.0 3.43e-01 98.2% 42.4%
3599084 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.62 45.0 3.19e-01 80.4% 30.0%
3693882 286.1.1.3 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PrpF 0.62 51.0 3.60e-01 94.6% 41.1%
3355067 2485.1.1.4 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.61 39.0 3.17e-01 98.2% 34.3%
1760264 244.4.1.3 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases, PF27537 0.61 35.0 3.07e-01 98.2% 36.8%
3682328 372.2.1.1 ↗ a+b complex topology › RNase A-like › EndoU-like › EndoU-like › XendoU 0.60 49.0 3.30e-01 94.6% 100.0%
5048832 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.60 38.0 2.99e-01 98.2% 30.8%
3266967 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.58 45.0 2.66e-01 83.9% 47.4%
3334247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 39.0 3.07e-01 98.2% 35.5%
3430159 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 40.0 3.75e-01 96.4% 60.3%
3703909 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.56 50.0 3.17e-01 100.0% 36.1%
3422502 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 39.0 3.25e-01 80.4% 40.0%
None — 0.54 44.0 3.17e-01 100.0% 56.0%
3212107 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 40.0 2.59e-01 96.4% 17.3%
4962082 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.54 43.0 2.88e-01 92.9% 38.4%
4944151 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.53 42.0 2.81e-01 92.9% 38.8%
4954974 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 42.0 2.86e-01 92.9% 38.7%
4983396 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 41.0 3.86e-01 87.5% 72.9%
5076988 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 42.0 2.85e-01 92.9% 40.9%
3793372 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.51 33.0 3.49e-01 96.4% 72.0%
3935786 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.46e-01 76.8% 72.3%
3175567 3541.1.1.1 ↗ beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 0.50 42.0 3.39e-01 100.0% 48.1%