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KJ817847.1AIU68536.1X__00001

Bact-Vir

KJ817847.1__AIU68536.1__X__00001

Identity

Accession:: KJ817847 ↗
Kingdom:: phage

Quality

89.7 mean pLDDT

Taxonomy

Enterococcus_phage_MSF1

TaxID: 1564251

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-33_111-225

PDB

Domain cluster: rep: OP172808.1__WAX16238.1__EL753P1_00016__00016__D16-72_146-260

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05133.20 best	SPP1_portal	40.5	2.70e-10	91.9%	23.4%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4i8oA02	3.30.160.690	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain	0.64	29.0	3.74e-01	76.4%	71.1%
3ovcA01	3.30.200.150	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 ›	0.61	29.0	4.23e-01	77.0%	98.6%
3zoqC00	6.20.250.30	Special › Other non-globular › Double Stranded RNA Binding Domain ›	0.57	22.0	3.44e-01	83.1%	94.3%
5cfvA01	3.30.700.10	Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin	0.56	35.0	4.06e-01	80.4%	86.9%
2ecfA01	2.140.10.30	Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain	0.55	39.0	2.79e-01	73.0%	48.4%
1orvA01	2.140.10.30	Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain	0.55	39.0	2.75e-01	73.0%	47.2%
3dtdD00	2.60.40.1880	Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein	0.54	39.0	3.96e-01	73.0%	100.0%
2qmiA02	2.40.128.210	Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain	0.54	27.0	3.23e-01	76.4%	70.0%
1vprA03	2.40.128.20	Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain	0.53	37.0	3.65e-01	80.4%	65.6%
4r80A00	3.10.450.630	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	26.0	3.52e-01	83.1%	89.5%
4da5A01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.51	27.0	3.69e-01	73.0%	95.2%
3h20A01	3.30.1490.240	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain	0.51	25.0	3.41e-01	93.9%	100.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4034609	4056.1.1.1 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6	0.79	56.0	6.49e-01	81.8%	98.2%
5081122	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.72	47.0	5.68e-01	77.0%	98.0%
3511356	4056.1.1.1 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_prot_Gp6	0.72	50.0	5.85e-01	81.8%	100.0%
5023763	4237.1.1.1 ↗	beta barrels › FomD-like › FomD-like › FomD-like › DUF402	0.57	38.0	3.74e-01	85.1%	61.9%
4975453	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.53	36.0	3.46e-01	82.4%	60.9%
4029739	9.8.1.1 ↗	beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc	0.52	33.0	3.67e-01	87.2%	78.3%
5078886	331.3.1.0 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like	0.52	28.0	3.16e-01	100.0%	66.4%
4561478	5.1.5.0 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed	0.52	40.0	2.48e-01	79.7%	65.4%
3493732	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.52	27.0	3.34e-01	98.6%	77.9%
3242250	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	28.0	3.14e-01	97.3%	67.5%
4946504	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.50	23.0	3.29e-01	73.6%	92.9%
3412380	12.3.1.13 ↗	beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C	0.50	38.0	3.00e-01	79.1%	85.6%

D2 medium residues 34-110_226-246

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05133.20 best	SPP1_portal	49.1	6.70e-13	83.7%	18.9%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ihqA02	1.10.390.40	Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 ›	0.61	32.0	3.79e-01	91.8%	75.0%
3pe0A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	33.0	3.33e-01	71.4%	65.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3652007	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.52	43.0	3.39e-01	91.8%	85.1%
3248563	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.51	25.0	2.99e-01	100.0%	71.7%
3713201	4323.1.1.1 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I	0.50	37.0	3.35e-01	80.6%	84.1%