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KM051843.1__AII27920.1__X__00019

Bact-Vir

KM051843.1__AII27920.1__X__00019

Identity

Accession:
KM051843 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Agatevirus› Bacillus_phage_Bobb

TaxID: 1527469

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-64
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7r97A01 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.74 66.0 4.74e-01 100.0% 69.6%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.73 61.0 5.05e-01 98.1% 61.6%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.72 59.0 5.60e-01 86.5% 91.7%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.70 59.0 5.53e-01 100.0% 89.6%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.69 62.0 4.95e-01 100.0% 61.4%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 57.0 4.85e-01 100.0% 66.7%
2guzB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.67 43.0 3.96e-01 100.0% 52.3%
4qicC01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.67 56.0 4.36e-01 100.0% 49.6%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.66 53.0 4.38e-01 96.2% 49.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 49.0 3.18e-01 86.5% 86.9%
3vpxB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 54.0 3.74e-01 100.0% 87.4%
2oauA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 44.0 3.65e-01 73.1% 38.2%
2n00A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.65 53.0 4.38e-01 92.3% 73.7%
3t6pA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 53.0 5.04e-01 100.0% 78.8%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.62 51.0 4.53e-01 98.1% 69.1%
1iv8A04 1.10.10.470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 0.62 52.0 4.28e-01 100.0% 51.5%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.62 52.0 3.88e-01 98.1% 75.2%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.62 49.0 4.87e-01 100.0% 96.6%
3nwoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 52.0 3.25e-01 100.0% 90.0%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.60 48.0 3.61e-01 98.1% 33.8%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 48.0 3.29e-01 100.0% 26.7%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.59 48.0 3.72e-01 94.2% 79.3%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 47.0 4.37e-01 94.2% 73.5%
2p11A02 1.10.286.50 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.58 48.0 4.38e-01 98.1% 68.9%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 44.0 4.01e-01 92.3% 76.9%
2guzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 40.0 3.61e-01 73.1% 66.2%
6wh0A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 45.0 3.26e-01 90.4% 70.4%
2nogB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 37.0 3.47e-01 71.2% 61.4%
1szhA02 1.10.150.370 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain 0.54 44.0 3.86e-01 100.0% 59.8%
2qvwB05 1.10.1740.150 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.53 44.0 3.88e-01 100.0% 63.2%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.53 42.0 4.03e-01 96.2% 77.8%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 42.0 3.71e-01 100.0% 76.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4361639 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.84 71.0 6.19e-01 98.1% 62.0%
3928496 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.81 70.0 6.69e-01 100.0% 83.3%
3626098 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 66.0 6.75e-01 96.2% 92.0%
4979817 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.80 68.0 5.93e-01 100.0% 62.5%
4053752 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.80 64.0 6.23e-01 96.2% 80.0%
3610347 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.80 69.0 5.94e-01 100.0% 68.2%
4247396 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.78 64.0 4.48e-01 100.0% 28.2%
4489939 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.78 54.0 5.18e-01 73.1% 63.3%
3877052 235.1.1.31 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 0.78 56.0 3.88e-01 98.1% 23.5%
3627893 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.78 67.0 6.46e-01 100.0% 95.0%
3545484 103.1.1.53 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.78 68.0 6.36e-01 100.0% 84.6%
3870903 103.1.1.53 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.78 66.0 6.38e-01 100.0% 91.7%
3213401 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 65.0 5.56e-01 100.0% 65.6%
4939455 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.77 62.0 5.97e-01 98.1% 81.7%
4494422 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.76 60.0 4.30e-01 98.1% 30.7%
5076320 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.75 67.0 5.37e-01 100.0% 53.0%
3930506 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.73 54.0 5.20e-01 88.5% 70.0%
4634892 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 59.0 4.90e-01 98.1% 64.0%
4665959 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 57.0 5.58e-01 96.2% 85.0%
5060163 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.71 60.0 5.63e-01 100.0% 90.8%
4248743 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.70 57.0 5.27e-01 96.2% 71.4%
5025683 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.70 59.0 5.82e-01 100.0% 96.4%
4182099 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.69 54.0 5.53e-01 90.4% 98.0%
4388170 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.69 58.0 5.60e-01 98.1% 88.3%
3517666 2485.1.1.121 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14, Thioredoxin_15 0.68 56.0 3.27e-01 96.2% 19.9%
3431630 103.5.1.8 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DUF1677 0.68 53.0 4.80e-01 92.3% 62.7%
4148498 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.67 53.0 5.45e-01 92.3% 100.0%
3815745 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.67 53.0 4.66e-01 88.5% 62.5%
4991064 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.67 55.0 3.30e-01 96.2% 13.3%
3989224 4125.1.1.2 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like › HAAS 0.66 54.0 5.16e-01 100.0% 93.8%
3690869 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.13e-01 84.6% 47.4%
3786647 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.65 54.0 4.73e-01 94.2% 62.5%
3724166 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.64 47.0 4.37e-01 78.8% 92.3%
5050325 4333.1.1.0 ↗ a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.64 51.0 3.32e-01 98.1% 72.3%
3844868 6088.1.1.2 ↗ alpha arrays › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › Helical bundle domain in elongation factor 3A › PF26051 0.63 55.0 4.85e-01 98.1% 69.3%
3210490 192.6.1.6 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › VPS18_RING_C 0.61 44.0 3.70e-01 76.9% 67.8%
5077954 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 48.0 3.69e-01 92.3% 86.2%
4988673 181.1.1.34 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › AzlD 0.59 49.0 4.57e-01 98.1% 72.9%
4451442 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.59 47.0 3.03e-01 100.0% 85.2%
5019807 101.1.2.894 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2240 0.58 44.0 3.42e-01 92.3% 34.5%
2557383 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.57 46.0 3.70e-01 100.0% 59.3%
5066119 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 48.0 3.04e-01 100.0% 89.0%
3170010 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.56 41.0 2.56e-01 78.8% 45.6%
4024170 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 43.0 4.22e-01 90.4% 78.3%
3438234 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.55 45.0 4.23e-01 94.2% 73.8%
3337903 108.1.1.23 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.55 44.0 4.14e-01 92.3% 72.3%
4522200 3684.1.1.1 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF615 0.54 44.0 3.87e-01 96.2% 63.5%
3420431 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.54 47.0 3.98e-01 98.1% 75.3%
3815976 108.1.1.23 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.53 40.0 3.93e-01 90.4% 78.3%
3809254 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.53 43.0 4.02e-01 90.4% 78.5%
3734404 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.51 41.0 3.74e-01 98.1% 81.2%
5016115 632.11.1.17 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF1722 0.51 42.0 3.86e-01 94.2% 74.3%
2754881 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.51 41.0 3.88e-01 96.2% 88.4%