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KM058087.1__AIK67540.1__SS1_36__00036
Bact-VirKM058087.1__AIK67540.1__SS1_36__00036
Identity
- Accession:
- KM058087 ↗
- Kingdom:
- phage
Quality
84.6
mean pLDDT
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-75
Domain cluster:
rep: NC_047948.1__YP_009799981.1__HOT02_gp141__00140__D1-84
D2
medium
residues 77-131
Domain cluster:
rep: SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00367__D226-276
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.62 | 42.0 | 4.43e-01 | 72.7% | 86.0% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.60 | 41.0 | 4.37e-01 | 70.9% | 91.3% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.57 | 41.0 | 3.29e-01 | 78.2% | 70.3% |
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.52 | 33.0 | 3.56e-01 | 80.0% | 77.8% |
| 3e7wA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 38.0 | 3.16e-01 | 81.8% | 74.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517987 | 355.1.1.0 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like | 0.66 | 36.0 | 3.99e-01 | 85.5% | 66.7% |
| 4492966 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.63 | 45.0 | 4.53e-01 | 76.4% | 83.6% |
| 4321707 | 865.1.1.2 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C | 0.60 | 46.0 | 3.70e-01 | 85.5% | 59.3% |
| 4519116 | 865.1.1.2 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C | 0.60 | 46.0 | 3.61e-01 | 81.8% | 40.0% |
| 4521568 | 101.45.1.0 ↗ | alpha arrays › HTH › DNA polymerase II large subunit DP2 helical domain › DNA polymerase II large subunit DP2 helical domain | 0.60 | 42.0 | 3.53e-01 | 74.5% | 62.1% |
| 3985839 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.59 | 41.0 | 3.88e-01 | 74.5% | 62.9% |
| 3561589 | 103.1.1.51 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_SIK3 | 0.59 | 39.0 | 3.71e-01 | 80.0% | 56.9% |
| 4962344 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.55 | 40.0 | 2.35e-01 | 81.8% | 44.1% |
| 3991620 | 212.1.1.25 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › MVD-like_N | 0.54 | 39.0 | 2.74e-01 | 81.8% | 78.5% |
| 4941551 | 3960.1.1.0 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain | 0.53 | 36.0 | 3.20e-01 | 72.7% | 56.0% |
| 3302133 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.51 | 36.0 | 2.27e-01 | 74.5% | 30.3% |