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KM083128.1__AII28166.1__PBI_SPARKY_18__00018
Bact-VirKM083128.1__AII28166.1__PBI_SPARKY_18__00018
Identity
- Accession:
- KM083128 ↗
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Taxonomy
TaxID: 1527493
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 90-151
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gr2A00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.71 | 64.0 | 5.29e-01 | 100.0% | 60.9% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.66 | 43.0 | 4.04e-01 | 100.0% | 55.4% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.65 | 47.0 | 3.54e-01 | 77.4% | 76.4% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 45.0 | 4.19e-01 | 100.0% | 58.0% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 43.0 | 3.55e-01 | 79.0% | 72.6% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 47.0 | 4.44e-01 | 98.4% | 73.0% |
| 2xvtC00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.59 | 37.0 | 3.48e-01 | 98.4% | 49.4% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 40.0 | 3.33e-01 | 72.6% | 94.0% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.58 | 44.0 | 3.65e-01 | 87.1% | 56.5% |
| 3tulB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 45.0 | 3.59e-01 | 88.7% | 88.0% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 51.0 | 3.84e-01 | 100.0% | 58.7% |
| 1fkmA02 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.56 | 45.0 | 3.60e-01 | 88.7% | 93.8% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.56 | 34.0 | 3.21e-01 | 83.9% | 49.4% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.56 | 39.0 | 3.42e-01 | 77.4% | 96.1% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.55 | 41.0 | 3.50e-01 | 82.3% | 92.5% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 40.0 | 3.34e-01 | 100.0% | 45.0% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.54 | 39.0 | 3.33e-01 | 80.6% | 97.4% |
| 3p0hB02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 43.0 | 2.78e-01 | 88.7% | 24.5% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 43.0 | 3.36e-01 | 96.8% | 41.4% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 45.0 | 3.33e-01 | 100.0% | 36.4% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.52 | 41.0 | 3.89e-01 | 100.0% | 70.3% |
| 3pt1A02 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.52 | 39.0 | 3.29e-01 | 85.5% | 87.5% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 43.0 | 3.68e-01 | 100.0% | 69.6% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.52 | 41.0 | 3.40e-01 | 93.5% | 66.4% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.51 | 40.0 | 3.26e-01 | 85.5% | 65.6% |
| 5tj5E00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.51 | 37.0 | 2.98e-01 | 80.6% | 68.8% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.50 | 45.0 | 4.41e-01 | 98.4% | 91.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3924079 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.65 | 40.0 | 3.69e-01 | 100.0% | 45.9% |
| 3750735 | 601.1.2.15 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Frag1 | 0.65 | 49.0 | 4.22e-01 | 82.3% | 85.0% |
| 3620725 | 5041.1.1.17 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › Periphilin_C | 0.61 | 47.0 | 3.96e-01 | 83.9% | 88.6% |
| 3568464 | 4144.2.1.4 ↗ | alpha duplicates or obligate multimers › YejL-like › D domain of Cdc4 and beta-TrCP › D domain of Cdc4 and beta-TrCP › DUF4508 | 0.58 | 43.0 | 4.03e-01 | 82.3% | 66.3% |
| 4029298 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 45.0 | 2.99e-01 | 87.1% | 41.2% |
| 4619538 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.56 | 45.0 | 3.75e-01 | 90.3% | 93.0% |
| 4206858 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.56 | 45.0 | 3.72e-01 | 90.3% | 93.0% |
| 3348608 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.56 | 42.0 | 3.57e-01 | 83.9% | 78.2% |
| 3838243 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.54 | 38.0 | 3.07e-01 | 75.8% | 71.1% |
| 4930182 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.54 | 40.0 | 2.95e-01 | 83.9% | 67.2% |
| 3965811 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.54 | 43.0 | 3.73e-01 | 95.2% | 98.2% |
| 3499876 | 574.1.1.0 ↗ | alpha bundles › Surp module (SWAP domain) › Surp module (SWAP domain) › Surp module (SWAP domain) | 0.53 | 40.0 | 3.84e-01 | 85.5% | 70.7% |
| 3735933 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 44.0 | 3.45e-01 | 96.8% | 86.2% |
| 3829876 | 3562.1.1.11 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG | 0.53 | 39.0 | 3.06e-01 | 82.3% | 53.1% |
| 3476064 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.51 | 38.0 | 3.21e-01 | 87.1% | 81.7% |
D2
medium
residues 4-79
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.68 | 49.0 | 4.87e-01 | 73.7% | 89.6% |
| 2kr1A00 | 6.10.130.10 | Special › Helix non-globular › GTP Cyclohydrolase I; Chain A, domain 1 › Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain (AZUL) | 0.61 | 46.0 | 5.02e-01 | 100.0% | 95.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3910498 | 103.1.1.38 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ELM2 | 0.68 | 49.0 | 4.33e-01 | 75.0% | 62.9% |
| 3210673 | 4085.1.1.4 ↗ | alpha arrays › RbcX-like › RbcX-like › RbcX-like › MARCHF6_C | 0.60 | 52.0 | 4.00e-01 | 97.4% | 76.1% |
| 4013742 | 148.1.3.179 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_BCS1 | 0.58 | 42.0 | 4.17e-01 | 76.3% | 76.2% |
| 4976420 | 1074.1.1.0 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases | 0.58 | 40.0 | 3.71e-01 | 73.7% | 55.2% |
| 3210826 | 2485.1.1.67 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT | 0.57 | 39.0 | 2.90e-01 | 73.7% | 42.7% |
| 5030207 | 1074.1.1.4 ↗ | alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N | 0.55 | 47.0 | 4.17e-01 | 100.0% | 74.2% |