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KM083128.1__AII28205.1__PBI_SPARKY_61__00057

Bact-Vir

KM083128.1__AII28205.1__PBI_SPARKY_61__00057

Identity

Accession:
KM083128 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sparkyvirus› Mycobacterium_phage_Sparky

TaxID: 1527493

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-75
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.91 66.0 5.08e-01 76.0% 39.2%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.79 54.0 3.82e-01 72.0% 80.6%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 70.0 5.48e-01 100.0% 52.0%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.78 65.0 4.54e-01 96.0% 29.9%
3hh0A02 6.10.250.360 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 67.0 6.28e-01 100.0% 85.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 69.0 5.84e-01 98.0% 74.7%
1sdoA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.76 54.0 3.62e-01 88.0% 19.8%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.75 58.0 4.38e-01 84.0% 57.6%
4wv4B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.75 63.0 5.12e-01 94.0% 54.8%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.70 61.0 4.45e-01 96.0% 37.6%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.70 49.0 4.20e-01 74.0% 46.8%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 52.0 3.64e-01 82.0% 26.1%
6iy8A01 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.68 58.0 3.90e-01 96.0% 26.5%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.68 51.0 3.53e-01 82.0% 37.7%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.65 46.0 3.87e-01 74.0% 44.0%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 50.0 3.33e-01 88.0% 20.3%
3dewA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 48.0 3.60e-01 88.0% 32.1%
2ra1A02 1.20.58.780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 45.0 4.09e-01 86.0% 57.4%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.61 47.0 3.08e-01 84.0% 19.7%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.59 39.0 4.13e-01 70.0% 82.9%
1a8uA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 42.0 2.68e-01 78.0% 26.7%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 41.0 3.70e-01 82.0% 56.4%
2yhaA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 47.0 3.13e-01 100.0% 89.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4514462 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.85 77.0 6.05e-01 100.0% 54.0%
4942577 101.1.16.1 ↗ alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11 0.85 75.0 5.22e-01 96.0% 35.3%
4435237 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.85 75.0 5.89e-01 100.0% 51.4%
3321923 603.2.1.16 ↗ alpha bundles › STAT-like › STAT › STAT › DUF3537 0.82 72.0 4.41e-01 100.0% 18.6%
3912535 603.2.1.1 ↗ alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.78 71.0 4.64e-01 100.0% 32.8%
3907116 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 68.0 4.65e-01 100.0% 39.3%
3773387 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 3.88e-01 98.0% 82.0%
4027189 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.70 62.0 5.12e-01 100.0% 77.8%
4030407 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 65.0 5.55e-01 100.0% 78.7%
3724512 148.1.1.21 ↗ alpha arrays › Histone-like › Histone-related › Histone › SAGA-Tad1 0.68 60.0 4.59e-01 96.0% 50.5%
3655807 148.1.1.34 ↗ alpha arrays › Histone-like › Histone-related › Histone › DUF502 0.68 56.0 4.63e-01 94.0% 51.1%
3222941 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.67 58.0 3.87e-01 96.0% 25.9%