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KM199771.1__AIK68491.1__Lo5R7ANS_21__00021

Bact-Vir

KM199771.1__AIK68491.1__Lo5R7ANS_21__00021

Identity

Accession:
KM199771 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pairvirus› Mesorhizobium_phage_vB_MloP_Lo5R7ANS

TaxID: 1527771

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-56
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00284__D7-61
D2 medium residues 66-120
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.54e-01 74.5% 89.0%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.63 43.0 3.86e-01 72.7% 54.9%
2zzeA04 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.62 44.0 3.73e-01 76.4% 45.3%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 41.0 3.89e-01 70.9% 68.7%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 46.0 3.93e-01 94.5% 63.9%
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.56 40.0 4.10e-01 81.8% 77.4%
2vugA05 3.30.70.3360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 3.87e-01 70.9% 79.2%
5reqB03 1.10.196.20 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 1 › 0.55 38.0 4.23e-01 78.2% 90.7%
1tjyA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 39.0 2.86e-01 76.4% 62.6%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 38.0 3.12e-01 74.5% 41.4%
3iwcB00 3.30.360.110 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain 0.55 43.0 4.20e-01 87.3% 80.3%
1hufA00 3.30.1570.10 Alpha Beta › 2-Layer Sandwich › YopH tyrosine phosphatase N-terminal domain › Protein-tyrosine phosphatase, YopH, N-terminal domain 0.54 39.0 3.02e-01 76.4% 88.6%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 38.0 3.51e-01 78.2% 56.2%
4mtuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 46.0 3.48e-01 100.0% 83.2%
3blnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 39.0 3.03e-01 83.6% 48.6%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.50 42.0 2.83e-01 96.4% 48.9%
3qi7A03 3.30.30.130 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.50 36.0 3.83e-01 85.5% 95.6%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603223 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.66 55.0 4.13e-01 96.4% 100.0%
4446761 3433.1.2.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain 0.66 44.0 4.49e-01 81.8% 70.9%
3596657 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 49.0 4.25e-01 83.6% 56.7%
3419512 304.9.1.91 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF7597 0.60 44.0 3.98e-01 81.8% 56.0%
3254595 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 44.0 3.79e-01 83.6% 68.4%
3423396 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.59 40.0 3.47e-01 76.4% 44.7%
3737212 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 41.0 2.97e-01 74.5% 30.0%
4028164 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 42.0 2.53e-01 80.0% 31.4%
3684494 304.9.1.91 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF7597 0.57 43.0 3.80e-01 83.6% 53.8%
3899658 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.56 40.0 4.39e-01 80.0% 91.1%
3651637 7524.1.1.0 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.55 40.0 2.82e-01 78.2% 53.5%
3641084 387.1.5.31 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › PF29352 0.55 41.0 4.18e-01 81.8% 85.2%
3860270 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.54 39.0 2.50e-01 76.4% 61.1%
3640563 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 37.0 3.39e-01 85.5% 53.3%
3247604 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.53 42.0 2.96e-01 89.1% 84.3%
3331686 304.109.1.4 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e 0.52 40.0 3.53e-01 89.1% 57.8%
3947421 148.1.3.8 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.52 36.0 3.14e-01 78.2% 88.0%
4984324 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 40.0 3.00e-01 85.5% 58.6%
3479726 304.151.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase 0.51 38.0 3.38e-01 85.5% 52.2%
4036001 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.51 41.0 2.90e-01 89.1% 71.1%