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KM199771.1__AIK68518.1__Lo5R7ANS_48__00048
Bact-VirKM199771.1__AIK68518.1__Lo5R7ANS_48__00048
Identity
- Accession:
- KM199771 ↗
- Kingdom:
- phage
Quality
94.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Pairvirus›
Mesorhizobium_phage_vB_MloP_Lo5R7ANS
TaxID: 1527771
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-108
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3brjC00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.83 | 69.0 | 5.20e-01 | 89.0% | 54.0% |
| 2fekA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.71 | 41.0 | 3.26e-01 | 98.6% | 28.6% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.71 | 44.0 | 4.52e-01 | 100.0% | 64.8% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 50.0 | 4.77e-01 | 94.5% | 65.5% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 45.0 | 4.42e-01 | 100.0% | 64.1% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.65 | 55.0 | 4.32e-01 | 94.5% | 78.3% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.65 | 43.0 | 4.29e-01 | 95.9% | 65.8% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.64 | 38.0 | 3.55e-01 | 83.6% | 46.3% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 43.0 | 4.17e-01 | 94.5% | 61.9% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.63 | 53.0 | 4.31e-01 | 95.9% | 97.2% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.62 | 45.0 | 4.80e-01 | 100.0% | 91.8% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.62 | 45.0 | 4.25e-01 | 82.2% | 64.7% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.62 | 54.0 | 4.14e-01 | 100.0% | 43.3% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.61 | 42.0 | 4.13e-01 | 98.6% | 67.5% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 41.0 | 4.14e-01 | 71.2% | 77.3% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 38.0 | 3.71e-01 | 84.9% | 57.0% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 50.0 | 4.62e-01 | 97.3% | 71.6% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 45.0 | 4.44e-01 | 100.0% | 77.9% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.60 | 43.0 | 3.84e-01 | 75.3% | 81.2% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.59 | 44.0 | 3.91e-01 | 100.0% | 54.2% |
| 3zheC01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.59 | 42.0 | 3.14e-01 | 78.1% | 30.4% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 52.0 | 4.97e-01 | 100.0% | 97.7% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.58 | 49.0 | 4.79e-01 | 100.0% | 82.5% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 38.0 | 4.06e-01 | 84.9% | 77.8% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.58 | 45.0 | 3.73e-01 | 86.3% | 87.6% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.57 | 50.0 | 3.98e-01 | 100.0% | 50.3% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.57 | 47.0 | 3.59e-01 | 90.4% | 41.8% |
| 4l7nA01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.57 | 50.0 | 4.06e-01 | 100.0% | 53.1% |
| 2qnlA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 49.0 | 3.85e-01 | 100.0% | 70.4% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.55 | 40.0 | 3.76e-01 | 76.7% | 67.4% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.55 | 47.0 | 3.46e-01 | 100.0% | 80.8% |
| 5cofA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.55 | 47.0 | 3.66e-01 | 100.0% | 73.8% |
| 2zxeA02 | 1.20.1110.10 | Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain | 0.54 | 46.0 | 2.89e-01 | 94.5% | 16.6% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.54 | 47.0 | 3.91e-01 | 97.3% | 95.4% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 42.0 | 3.97e-01 | 100.0% | 69.9% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 38.0 | 3.84e-01 | 75.3% | 95.8% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.53 | 47.0 | 3.66e-01 | 100.0% | 71.4% |
| 2n00A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 34.0 | 3.19e-01 | 80.8% | 51.6% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 47.0 | 4.21e-01 | 100.0% | 84.0% |
| 3ok8A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.51 | 46.0 | 3.28e-01 | 100.0% | 33.8% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.51 | 44.0 | 4.18e-01 | 100.0% | 85.6% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 44.0 | 3.97e-01 | 97.3% | 70.4% |
| 3s4lA00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.51 | 40.0 | 3.00e-01 | 87.7% | 74.6% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.50 | 45.0 | 4.35e-01 | 100.0% | 91.5% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 54503 | 3931.1.1.0 ↗ | alpha bundles › MtlR-like › MtlR-like › MtlR-like | 0.85 | 70.0 | 5.27e-01 | 89.0% | 55.1% |
| 4009962 | 3931.1.1.1 ↗ | alpha bundles › MtlR-like › MtlR-like › MtlR-like › MtlR | 0.83 | 71.0 | 5.30e-01 | 91.8% | 52.7% |
| 3996406 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.73 | 45.0 | 4.62e-01 | 91.8% | 64.3% |
| 3600118 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.70 | 51.0 | 4.67e-01 | 100.0% | 58.9% |
| 3867165 | 3871.1.1.0 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST | 0.68 | 45.0 | 3.56e-01 | 100.0% | 35.0% |
| 4927671 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.68 | 49.0 | 3.46e-01 | 98.6% | 24.9% |
| 3506685 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.66 | 42.0 | 4.22e-01 | 91.8% | 62.7% |
| 4934293 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.66 | 46.0 | 4.50e-01 | 100.0% | 66.3% |
| 5077106 | 3861.1.1.0 ↗ | alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) | 0.65 | 45.0 | 3.83e-01 | 100.0% | 45.6% |
| 3430353 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.64 | 47.0 | 3.92e-01 | 98.6% | 44.8% |
| 3533053 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.64 | 45.0 | 3.94e-01 | 91.8% | 47.8% |
| 3595797 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.64 | 50.0 | 4.57e-01 | 100.0% | 64.2% |
| 3512966 | 604.27.1.0 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac | 0.64 | 40.0 | 4.07e-01 | 87.7% | 65.7% |
| 4671784 | 3755.3.1.310 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CemA | 0.63 | 43.0 | 3.64e-01 | 100.0% | 43.3% |
| 3668118 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.62 | 44.0 | 4.29e-01 | 91.8% | 67.5% |
| 3309133 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.61 | 41.0 | 3.97e-01 | 84.9% | 60.0% |
| 5028218 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 36.0 | 3.84e-01 | 80.8% | 66.2% |
| 3612308 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.60 | 42.0 | 3.71e-01 | 100.0% | 47.8% |
| 3537310 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.60 | 39.0 | 4.08e-01 | 93.2% | 73.8% |
| 3225117 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.60 | 38.0 | 3.96e-01 | 90.4% | 70.8% |
| 4975282 | 545.1.2.0 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain | 0.60 | 43.0 | 4.22e-01 | 100.0% | 70.0% |
| 3605439 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.59 | 42.0 | 4.32e-01 | 75.3% | 78.6% |
| 3233589 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 49.0 | 4.95e-01 | 100.0% | 90.7% |
| 3730125 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.58 | 51.0 | 3.95e-01 | 100.0% | 44.4% |
| 3225136 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.58 | 41.0 | 4.19e-01 | 93.2% | 77.1% |
| 3168929 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.58 | 49.0 | 3.77e-01 | 100.0% | 40.6% |
| 4935180 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.57 | 44.0 | 3.97e-01 | 100.0% | 60.0% |
| 3194290 | 376.1.4.4 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 | 0.57 | 47.0 | 4.23e-01 | 90.4% | 90.0% |
| 3340029 | 101.1.1.176 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DEK_C | 0.57 | 45.0 | 4.49e-01 | 93.2% | 82.7% |
| 3249906 | 198.1.1.3 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 | 0.56 | 48.0 | 4.58e-01 | 95.9% | 96.5% |
| 4021017 | 3266.1.1.1 ↗ | alpha arrays › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1_C | 0.56 | 40.0 | 4.16e-01 | 87.7% | 84.6% |
| 3264568 | 3748.1.1.3 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C | 0.56 | 51.0 | 4.50e-01 | 100.0% | 87.6% |
| 5014572 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.56 | 47.0 | 3.67e-01 | 95.9% | 83.6% |
| 3545310 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.55 | 47.0 | 4.15e-01 | 100.0% | 63.6% |
| 3584605 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.55 | 42.0 | 2.97e-01 | 82.2% | 38.2% |
| 3694750 | 3755.3.1.446 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Brr6_like_C_C | 0.54 | 47.0 | 3.68e-01 | 100.0% | 85.6% |
| 3803972 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.53 | 42.0 | 4.31e-01 | 84.9% | 94.3% |
| 3719008 | 3371.1.1.0 ↗ | few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 | 0.53 | 39.0 | 3.39e-01 | 80.8% | 84.2% |
| 3495546 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.52 | 48.0 | 3.65e-01 | 100.0% | 71.9% |
| 5018995 | 1079.1.1.5 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DsbD_2 | 0.51 | 43.0 | 3.10e-01 | 94.5% | 36.4% |
| 4976290 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.51 | 36.0 | 3.53e-01 | 90.4% | 67.5% |
| 4998688 | 192.2.1.89 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF7121 | 0.51 | 44.0 | 3.07e-01 | 98.6% | 100.0% |