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KM199771.1__AIK68534.1__Lo5R7ANS_64__00064

Bact-Vir

KM199771.1__AIK68534.1__Lo5R7ANS_64__00064

Identity

Accession:
KM199771 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Pairvirus› Mesorhizobium_phage_vB_MloP_Lo5R7ANS

TaxID: 1527771

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-73
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.75 59.0 5.64e-01 89.3% 92.5%
2oocB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.74 66.0 5.36e-01 100.0% 63.8%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.72 57.0 5.51e-01 91.1% 87.9%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.68 49.0 4.52e-01 78.6% 65.3%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.68 53.0 4.45e-01 85.7% 76.0%
1jswA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.67 53.0 4.11e-01 91.1% 66.4%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 56.0 3.71e-01 100.0% 26.3%
1xwjA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.65 51.0 4.02e-01 91.1% 59.2%
4c1uA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 55.0 3.79e-01 98.2% 69.2%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.64 55.0 4.54e-01 100.0% 83.2%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.64 50.0 4.83e-01 87.5% 79.4%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 56.0 5.04e-01 100.0% 82.9%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.62 49.0 4.32e-01 89.3% 75.0%
2qm8A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.62 50.0 4.83e-01 98.2% 76.9%
7p5hB03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.62 48.0 4.24e-01 89.3% 68.5%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.61 44.0 3.71e-01 80.4% 63.1%
3bqoA00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.60 48.0 3.33e-01 89.3% 87.6%
4rk2A00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 50.0 3.06e-01 98.2% 54.2%
3zxsC02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 53.0 3.84e-01 100.0% 87.7%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 36.0 3.49e-01 94.6% 53.0%
2p67A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.58 45.0 4.36e-01 98.2% 75.4%
3fmcC01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 49.0 3.12e-01 100.0% 55.2%
4aq4A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 48.0 3.30e-01 98.2% 69.4%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.56 38.0 3.37e-01 73.2% 86.5%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 41.0 3.60e-01 89.3% 69.7%
3crmA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.54 45.0 4.04e-01 98.2% 79.8%
2wglA00 1.10.4190.10 Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF 0.53 42.0 2.99e-01 96.4% 63.2%
2qgnA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.52 43.0 3.91e-01 98.2% 75.6%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.50 37.0 3.32e-01 87.5% 68.8%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3323850 601.1.1.58 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › FPP 0.88 73.0 6.56e-01 89.3% 85.3%
4139925 632.7.1.38 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › FPP 0.84 70.0 6.05e-01 91.1% 77.6%
4440860 632.21.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › DUF7917 0.80 65.0 5.29e-01 87.5% 60.0%
4243491 632.24.1.4 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › FIVAR 0.80 67.0 6.04e-01 91.1% 84.0%
4464616 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.79 66.0 5.60e-01 91.1% 72.2%
5068187 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.79 63.0 5.73e-01 87.5% 78.4%
4492498 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.78 63.0 5.66e-01 91.1% 75.0%
4678126 2002.1.1.17 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEPcase 0.76 56.0 3.02e-01 78.6% 19.4%
54465 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.74 66.0 5.37e-01 100.0% 64.4%
3337903 108.1.1.23 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.72 60.0 5.80e-01 96.4% 81.5%
3815976 108.1.1.23 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.72 59.0 5.84e-01 94.6% 86.7%
119325 103.3.1.1 ↗ alpha arrays › RuvA-C › Tas3 C-terminal helical domains › Tas3 C-terminal helical domains › Tas3_C-hel 0.70 54.0 5.46e-01 91.1% 86.0%
3597496 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.70 51.0 3.60e-01 80.4% 36.2%
4323062 2003.1.2.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.69 60.0 3.64e-01 100.0% 44.3%
4996117 601.5.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Colicin D immunity protein › Colicin D immunity protein 0.69 54.0 4.99e-01 89.3% 89.3%
3664414 509.1.1.13 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.69 51.0 4.86e-01 80.4% 75.4%
3181966 509.1.1.13 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 0.68 48.0 4.40e-01 75.0% 65.3%
3821280 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.67 52.0 4.86e-01 85.7% 75.7%
3814902 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.67 51.0 4.73e-01 85.7% 69.3%
3269934 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.67 52.0 4.42e-01 85.7% 51.6%
3757517 185.1.3.1 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › GDNF receptor › GDNF 0.67 46.0 3.88e-01 71.4% 56.7%
3782787 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.67 53.0 4.90e-01 91.1% 96.0%
4937236 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.66 41.0 3.40e-01 73.2% 36.0%
4999265 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.66 56.0 5.01e-01 96.4% 88.7%
3590851 181.2.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C 0.65 56.0 5.04e-01 100.0% 86.3%
4999255 601.37.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 0.65 57.0 4.87e-01 98.2% 83.3%
5043641 205.1.1.16 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.64 51.0 3.59e-01 91.1% 66.2%
3671293 509.1.1.12 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972 0.63 52.0 4.91e-01 96.4% 75.7%
3620215 101.1.1.35 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.59 43.0 3.00e-01 76.8% 24.7%
3716548 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 47.0 3.93e-01 91.1% 62.9%
5079293 1030.1.1.0 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.56 45.0 3.62e-01 96.4% 60.0%
4000254 3065.1.1.1 ↗ alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.55 42.0 3.39e-01 87.5% 50.4%
2330433 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.52 38.0 2.78e-01 78.6% 37.1%