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KM202147.1AKH60667.1X__00001

Bact-Vir

KM202147.1__AKH60667.1__X__00001

Identity

Accession:: KM202147 ↗
Kingdom:: phage

Quality

82.1 mean pLDDT

Taxonomy

Salmonella_phage_SEN2

TaxID: 1647457

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 95-167

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11651.15 best	P22_CoatProtein	32.4	6.00e-08	100.0%	14.1%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3c65A00	3.30.420.340	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › UvrC, RNAse H endonuclease domain	0.62	45.0	3.56e-01	100.0%	37.1%
2ajaA00	1.25.40.20	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain	0.60	50.0	3.25e-01	100.0%	19.8%
1qfxA02	3.40.50.1240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like	0.58	44.0	3.06e-01	100.0%	23.6%
1pzmA00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	42.0	3.27e-01	100.0%	34.7%
3w1oA00	3.40.1760.20	Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold ›	0.56	44.0	3.77e-01	95.9%	53.9%
5mmiJ02	1.10.10.250	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain	0.56	44.0	4.57e-01	95.9%	95.7%
6kd0A01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.54	47.0	3.09e-01	98.6%	59.4%
4v19K02	1.10.10.250	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain	0.54	44.0	4.43e-01	95.9%	94.7%
3oymA01	1.10.340.70	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 ›	0.53	35.0	3.27e-01	83.6%	53.8%
1vq8I00	1.10.10.250	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain	0.53	42.0	4.32e-01	100.0%	98.6%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2048179	2485.3.1.8 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein	0.87	77.0	5.36e-01	98.6%	32.1%
3214315	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.64	47.0	3.32e-01	100.0%	24.1%
3355066	7579.1.1.14 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3	0.63	45.0	3.23e-01	100.0%	26.8%
None	—		0.56	46.0	3.45e-01	95.9%	82.4%
4296004	101.1.16.1 ↗	alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11	0.55	45.0	4.11e-01	100.0%	68.0%
3663373	101.1.16.1 ↗	alpha arrays › HTH › HTH › Ribosomal protein L11, C-terminal domain › Ribosomal_L11	0.55	46.0	4.11e-01	95.9%	65.7%
4102070	2003.1.1.49 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M	0.55	44.0	3.00e-01	100.0%	23.2%
3962127	7579.1.1.89 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE	0.53	43.0	3.20e-01	100.0%	32.7%
3468117	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.52	45.0	3.47e-01	100.0%	45.6%
3998343	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.52	43.0	3.94e-01	100.0%	69.0%
4022567	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.52	45.0	3.74e-01	100.0%	63.7%
3480773	109.4.1.471 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC	0.52	46.0	3.26e-01	100.0%	37.8%
4941322	2004.1.1.30 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C	0.50	41.0	2.71e-01	89.0%	81.6%
4010412	639.2.1.0 ↗	alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR)	0.50	35.0	3.89e-01	98.6%	98.2%

D2 medium residues 29-84

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2haeA01	3.40.50.10380	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain	0.60	45.0	3.29e-01	89.3%	29.6%
5egwA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.57	44.0	2.65e-01	82.1%	13.5%
1khvA05	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.50	32.0	2.76e-01	83.9%	38.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4246528	842.1.1.1 ↗	a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1	0.82	66.0	4.25e-01	87.5%	20.5%
3499088	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.80	71.0	4.94e-01	100.0%	35.6%
5077404	842.1.1.1 ↗	a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thy1	0.78	56.0	3.58e-01	76.8%	17.1%
3725313	180.1.1.5 ↗	alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2_3	0.66	54.0	3.41e-01	92.9%	66.8%
3684539	2003.1.1.20 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase	0.61	47.0	3.15e-01	85.7%	20.9%

D3 medium residues 176-227

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11651.15 best	P22_CoatProtein	30.0	3.20e-07	100.0%	13.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4867073	2485.3.1.8 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein	0.86	72.0	5.54e-01	94.2%	42.9%