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KM209271.1__AIM51720.1__HQ82_0206__00036
Bact-VirKM209271.1__AIM51720.1__HQ82_0206__00036
Identity
- Accession:
- KM209271 ↗
- Kingdom:
- phage
Quality
78.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Dickeya_phage_phiDP10.3
TaxID: 1542132
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 65-127
Domain cluster:
rep: MT968995.1__QOQ37529.1__vBEcoMWL3_gp153__00151__D48-105
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26809.1 best | Phage_T4_gp13 | 89.7 | 3.20e-25 | 100.0% | 24.7% |
D2
medium
residues 1-57
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26809.1 best | Phage_T4_gp13 | 35.0 | 1.60e-08 | 100.0% | 23.1% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vw7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.61 | 48.0 | 3.12e-01 | 87.7% | 49.6% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.59 | 43.0 | 2.90e-01 | 82.5% | 53.8% |
| 4edgA01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.56 | 39.0 | 2.96e-01 | 89.5% | 31.3% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 44.0 | 3.10e-01 | 87.7% | 89.4% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.54 | 44.0 | 3.66e-01 | 87.7% | 75.5% |
| 5unhA02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.53 | 41.0 | 2.72e-01 | 89.5% | 76.0% |
| 3x3bA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 41.0 | 2.79e-01 | 96.5% | 68.6% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.51 | 42.0 | 2.65e-01 | 86.0% | 44.4% |
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.51 | 40.0 | 2.52e-01 | 93.0% | 22.1% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 37.0 | 2.30e-01 | 82.5% | 14.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4313184 | 375.1.1.14 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p | 0.76 | 49.0 | 4.87e-01 | 70.2% | 63.3% |
| 4490930 | 375.1.1.14 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p | 0.67 | 42.0 | 4.20e-01 | 73.7% | 61.7% |
| 3713284 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.65 | 50.0 | 2.95e-01 | 82.5% | 90.4% |
| 3080546 | 375.1.1.14 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L32p | 0.62 | 39.0 | 3.95e-01 | 73.7% | 62.7% |
| 3586696 | 223.1.1.101 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 | 0.60 | 48.0 | 3.11e-01 | 89.5% | 49.4% |
| 3652752 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.59 | 36.0 | 2.41e-01 | 78.9% | 14.9% |
| 3259016 | 1017.1.1.1 ↗ | a+b two layers › Rrs1 › Rrs1 › Rrs1 › RRS1 | 0.58 | 42.0 | 3.80e-01 | 77.2% | 55.0% |
| 4467985 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.57 | 41.0 | 3.36e-01 | 87.7% | 42.0% |
| 3710958 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.56 | 39.0 | 3.31e-01 | 84.2% | 44.2% |
| 3678569 | 109.4.1.2687 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28645 | 0.55 | 47.0 | 3.03e-01 | 100.0% | 81.1% |
| 3670056 | 109.4.1.1378 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2428, TPR_Trm732_C | 0.54 | 45.0 | 2.37e-01 | 91.2% | 12.5% |
| 3506749 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.54 | 44.0 | 3.20e-01 | 91.2% | 43.0% |
| 4345162 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.53 | 40.0 | 2.90e-01 | 80.7% | 84.4% |
| 3643641 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.53 | 38.0 | 3.29e-01 | 82.5% | 72.4% |
| 3766109 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 39.0 | 4.17e-01 | 89.5% | 90.0% |
| 3206547 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.52 | 38.0 | 3.37e-01 | 80.7% | 82.2% |