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KM209273.1__AIM51724.1__HQ82_0208__00001

Bact-Vir

KM209273.1__AIM51724.1__HQ82_0208__00001

Identity

Accession:
KM209273 ↗
Kingdom:
phage

Quality

93.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Dickeya_phage_phiDP10.3

TaxID: 1542132

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-113
PDB
Domain cluster: rep: NC_029042.1__YP_009220810.1__SP38_66__00066__D386-421_437-474
D2 high residues 121-246
PDB
Domain cluster: rep: NC_028805.1__YP_009199093.1__AVV11_gp159__00032__D87-175_259-272
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.61 32.0 4.17e-01 72.2% 96.9%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.59 39.0 4.20e-01 98.4% 77.3%
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.59 40.0 3.63e-01 100.0% 51.8%
6cl5A01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 39.0 4.29e-01 71.4% 84.3%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 40.0 3.96e-01 71.4% 99.3%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.57 42.0 4.01e-01 75.4% 97.9%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 4.52e-01 92.1% 95.9%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.55 36.0 3.74e-01 97.6% 70.1%
2waaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 35.0 3.60e-01 98.4% 65.0%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 4.18e-01 71.4% 100.0%
6ea2A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.54 41.0 3.56e-01 99.2% 53.5%
3obaA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 38.0 3.32e-01 98.4% 46.6%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 3.85e-01 82.5% 80.9%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 35.0 3.80e-01 82.5% 80.4%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 31.0 3.16e-01 97.6% 57.9%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 4.08e-01 89.7% 99.4%
3bpsA02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.52 39.0 3.70e-01 78.6% 96.7%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.52 35.0 3.60e-01 98.4% 70.6%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 37.0 3.35e-01 74.6% 97.7%
7zvmA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 3.77e-01 98.4% 84.3%
2p6cA00 2.60.120.460 Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like 0.51 36.0 3.50e-01 72.2% 99.3%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 36.0 2.85e-01 74.6% 72.2%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 3.46e-01 77.8% 98.2%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 3.57e-01 95.2% 72.2%
2pmwB02 2.60.120.690 Mainly Beta › Sandwich › Jelly Rolls › Proprotein convertase subtilisin/kexin type 9 0.50 42.0 3.65e-01 93.7% 65.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4971703 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 34.0 3.93e-01 97.6% 82.4%
5054260 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 36.0 3.80e-01 98.4% 69.1%
5064648 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 39.0 4.34e-01 73.0% 100.0%
5082908 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 38.0 4.12e-01 72.2% 100.0%
5047641 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 40.0 3.28e-01 77.0% 84.5%
3913587 10.32.1.233 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin 0.55 36.0 3.93e-01 96.0% 83.0%
3230282 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 38.0 3.64e-01 97.6% 60.7%
4952417 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.81e-01 98.4% 75.5%
4951620 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 38.0 4.00e-01 72.2% 100.0%
4980801 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 38.0 4.12e-01 72.2% 99.0%
4024469 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.54 38.0 3.78e-01 98.4% 68.1%
4958730 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 38.0 4.08e-01 97.6% 87.6%
3918177 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.53 38.0 3.60e-01 74.6% 98.7%
5042255 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 37.0 3.62e-01 70.6% 99.3%
5043233 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 37.0 4.10e-01 97.6% 93.0%
3221888 10.32.1.218 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.52 37.0 3.73e-01 97.6% 74.0%
4948545 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.52 44.0 3.87e-01 98.4% 61.1%
4217963 10.32.1.19 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.52 35.0 3.79e-01 97.6% 81.9%
4971702 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 32.0 3.72e-01 96.8% 85.6%
5026683 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.52 34.0 3.48e-01 96.0% 68.3%
5009693 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 36.0 3.86e-01 72.2% 94.5%
5008219 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 37.0 4.04e-01 98.4% 95.0%
4471982 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 46.0 3.77e-01 98.4% 54.3%
3869023 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 46.0 3.84e-01 98.4% 61.9%
3637320 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 35.0 3.28e-01 94.4% 55.6%
3259568 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 36.0 3.70e-01 75.4% 100.0%
5018266 846.1.1.1 ↗ a+b two layers › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › YjbQ-like (Pfam 01894) › UPF0047 0.50 35.0 3.46e-01 73.0% 99.3%
3598670 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 44.0 3.82e-01 98.4% 61.0%
3213513 10.32.1.218 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 0.50 36.0 3.72e-01 97.6% 80.9%
3489835 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.50 41.0 3.60e-01 97.6% 59.5%
D3 high residues 267-322
PDB
Domain cluster: rep: MN180248.1__QHJ75380.1__X__00018__D3-56