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KM224879.1__AII27157.1__ICP22013AHaiti_43__00043

Bact-Vir

KM224879.1__AII27157.1__ICP22013AHaiti_43__00043

Identity

Accession:
KM224879 ↗
Kingdom:
phage

Quality

64.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Icepovirus› Vibrio_phage_ICP2_2013_A_Haiti

TaxID: 1529058

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-71
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 37.0 3.45e-01 100.0% 41.3%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.65 35.0 3.31e-01 100.0% 42.5%
1vq8X00 3.10.440.10 Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 0.60 49.0 4.57e-01 98.3% 100.0%
4pzaB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.60 51.0 3.55e-01 100.0% 97.2%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.60 37.0 3.57e-01 100.0% 54.4%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 33.0 2.52e-01 86.7% 24.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.59 35.0 3.59e-01 100.0% 60.7%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.57 43.0 2.75e-01 85.0% 97.6%
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.93e-01 100.0% 64.5%
3ih5A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 39.0 2.76e-01 78.3% 61.0%
1przA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.54 46.0 3.31e-01 100.0% 85.6%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 2.72e-01 71.7% 62.5%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.54 45.0 4.52e-01 98.3% 100.0%
3w0fA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 40.0 3.30e-01 91.7% 68.4%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 42.0 2.96e-01 100.0% 59.8%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 2.95e-01 80.0% 37.8%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.56e-01 100.0% 65.2%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.54e-01 91.7% 87.8%
4ku4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 44.0 3.19e-01 98.3% 92.4%
4mb7A02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.50 37.0 3.00e-01 88.3% 66.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599123 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 44.0 2.78e-01 76.7% 38.6%
4053789 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.61 48.0 3.25e-01 100.0% 22.6%
4561982 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.59 51.0 3.61e-01 100.0% 31.1%
4996140 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.58 45.0 3.73e-01 85.0% 60.9%
4939738 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.56 39.0 3.52e-01 73.3% 70.6%
5029636 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.56 42.0 3.63e-01 83.3% 68.7%
3502586 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 42.0 3.29e-01 90.0% 48.4%
5075567 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.54 41.0 3.52e-01 86.7% 69.1%
3181098 223.1.1.94 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS-like 0.54 39.0 3.36e-01 78.3% 48.4%
4990978 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 40.0 3.20e-01 83.3% 81.5%
3665260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 42.0 2.93e-01 88.3% 52.0%
3470076 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.52 41.0 3.13e-01 85.0% 62.1%
4603703 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 3.15e-01 93.3% 91.3%
5051514 2004.1.1.16 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.51 42.0 3.08e-01 100.0% 39.5%
4926778 861.1.1.3 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › DUF6438 0.51 46.0 3.60e-01 100.0% 75.6%
5050870 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 42.0 3.05e-01 100.0% 40.0%