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KM236245.1__AIW03257.1__CPT_Mater100__00100

Bact-Vir

KM236245.1__AIW03257.1__CPT_Mater100__00100

Identity

Accession:
KM236245 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-111
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.74 41.0 4.94e-01 95.9% 83.9%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 41.0 4.19e-01 100.0% 56.8%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 42.0 4.18e-01 100.0% 55.9%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 39.0 3.74e-01 100.0% 47.3%
1d0nA05 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.69 33.0 3.32e-01 100.0% 43.8%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.68 36.0 3.46e-01 93.8% 45.0%
5utkA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 37.0 3.93e-01 100.0% 60.2%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 33.0 3.65e-01 100.0% 60.3%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 42.0 4.06e-01 91.8% 59.6%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 37.0 4.27e-01 100.0% 82.1%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.63 50.0 5.32e-01 94.8% 100.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.62 34.0 4.03e-01 100.0% 78.8%
3fgtA01 2.10.70.60 Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 0.60 29.0 3.72e-01 100.0% 80.0%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.60 34.0 3.45e-01 100.0% 52.5%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 30.0 2.84e-01 91.8% 36.4%
2a74A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.60 37.0 3.67e-01 100.0% 58.1%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 39.0 3.12e-01 100.0% 32.4%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 34.0 3.35e-01 100.0% 52.9%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 37.0 4.08e-01 96.9% 81.6%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.58 37.0 3.37e-01 90.7% 47.7%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 37.0 3.55e-01 93.8% 55.0%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.58 36.0 4.28e-01 93.8% 93.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 37.0 4.04e-01 96.9% 82.9%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 31.0 3.57e-01 100.0% 76.9%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 36.0 3.38e-01 100.0% 50.8%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.56 38.0 3.68e-01 100.0% 62.2%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.58e-01 100.0% 57.7%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 36.0 3.28e-01 100.0% 47.8%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.23e-01 87.6% 55.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 43.0 3.54e-01 92.8% 49.1%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.51 41.0 4.10e-01 100.0% 84.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 30.0 3.33e-01 87.6% 72.7%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.77 43.0 4.87e-01 100.0% 72.0%
146929 3115.3.1.1 a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.70 36.0 4.58e-01 91.8% 85.7%
4028150 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.68 43.0 4.18e-01 100.0% 56.4%
3508990 3115.3.1.2 a+b two layers › GP2-like › P56 › P56 › DUF2922 0.68 44.0 5.24e-01 89.7% 98.4%
3727692 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 45.0 3.61e-01 100.0% 35.1%
3287357 3115.3.1.0 a+b two layers › GP2-like › P56 › P56 0.67 40.0 4.95e-01 90.7% 98.3%
4031235 3986.2.1.2 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › DUF2922 0.67 45.0 5.08e-01 100.0% 94.3%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 40.0 4.89e-01 89.7% 96.7%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 33.0 4.44e-01 88.7% 100.0%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.66 33.0 4.39e-01 90.7% 94.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 32.0 4.35e-01 99.0% 100.0%
3994984 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 41.0 4.81e-01 92.8% 93.8%
5009745 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.65 44.0 4.13e-01 93.8% 58.3%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 32.0 4.29e-01 88.7% 100.0%
4983643 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.64 42.0 4.15e-01 92.8% 62.9%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.64 36.0 4.51e-01 90.7% 98.2%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.63 34.0 4.45e-01 90.7% 100.0%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 34.0 4.40e-01 88.7% 100.0%
2723970 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.63 44.0 4.06e-01 94.8% 57.0%
4472409 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.63 35.0 2.95e-01 77.3% 30.6%
4330212 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.63 43.0 4.05e-01 93.8% 59.1%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 35.0 4.31e-01 91.8% 91.4%
4962205 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.63 42.0 3.99e-01 93.8% 58.3%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 39.0 4.50e-01 92.8% 92.3%
3510040 3115.3.1.2 a+b two layers › GP2-like › P56 › P56 › DUF2922 0.61 39.0 4.23e-01 90.7% 78.8%
2006886 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.60 43.0 3.89e-01 93.8% 55.5%
4648475 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 36.0 4.29e-01 91.8% 95.0%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 38.0 4.24e-01 96.9% 82.7%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.60 37.0 4.34e-01 94.8% 93.8%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 37.0 4.32e-01 92.8% 96.7%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 36.0 4.30e-01 90.7% 96.6%
5068178 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.60 42.0 4.26e-01 93.8% 73.7%
4210460 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 51.0 4.79e-01 93.8% 98.3%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 38.0 4.02e-01 95.9% 74.7%
3235407 11.2.1.52 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_nem 0.59 40.0 3.54e-01 100.0% 46.2%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 35.0 4.20e-01 91.8% 96.6%
4277768 223.2.1.52 a+b three layers › Profilin-like › profilin-like › profilin-like › GAP1-N2 0.59 35.0 3.06e-01 77.3% 38.6%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 37.0 4.13e-01 96.9% 82.7%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.59 35.0 4.18e-01 90.7% 96.6%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 37.0 3.67e-01 96.9% 60.0%
5041452 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.58 41.0 3.54e-01 99.0% 47.1%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.57 35.0 4.01e-01 91.8% 90.5%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.57 37.0 4.14e-01 96.9% 90.0%
3905094 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 40.0 3.61e-01 92.8% 51.9%
4146398 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.56 34.0 2.86e-01 77.3% 33.5%
1145963 4012.3.1.1 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.55 35.0 3.47e-01 90.7% 61.0%
5033505 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.70e-01 100.0% 65.5%
3965010 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.53 40.0 4.17e-01 100.0% 88.9%
2896602 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.53 41.0 4.06e-01 100.0% 80.0%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.52 33.0 3.30e-01 85.6% 59.6%
3215573 11.29.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › PUD homologs › PUD homologs › PUD1_2 0.50 39.0 3.43e-01 100.0% 55.9%
D2 medium residues 116-153
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.74 64.0 5.05e-01 100.0% 49.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 60.0 4.30e-01 100.0% 34.9%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 57.0 4.54e-01 100.0% 51.9%
5kp7B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.65 56.0 4.34e-01 94.7% 63.3%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.65 54.0 3.11e-01 94.7% 27.5%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 54.0 4.76e-01 100.0% 63.8%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.63 48.0 3.40e-01 84.2% 84.3%
4ciuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.09e-01 100.0% 20.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3178900 192.2.1.30 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 0.67 55.0 3.85e-01 100.0% 29.7%
4001765 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 52.0 3.54e-01 100.0% 34.3%
3974625 5086.1.1.84 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND 0.64 55.0 4.59e-01 100.0% 61.4%
3936662 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.63 55.0 3.20e-01 100.0% 11.1%
3424395 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.60 50.0 3.56e-01 92.1% 32.7%
3263864 109.4.1.308 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps39_1 0.59 47.0 2.92e-01 100.0% 14.5%
3750022 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.55 40.0 3.18e-01 100.0% 49.1%