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KM236245.1__AIW03273.1__CPT_Mater116__00116

Bact-Vir

KM236245.1__AIW03273.1__CPT_Mater116__00116

Identity

Accession:
KM236245 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Matervirus› Bacillus_phage_Mater

TaxID: 1540090

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-60
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.72 51.0 3.80e-01 75.5% 83.6%
3eagA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 50.0 3.29e-01 79.2% 22.1%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 50.0 4.48e-01 92.5% 65.8%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 3.23e-01 79.2% 42.5%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 46.0 3.76e-01 90.6% 95.1%
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 48.0 3.81e-01 100.0% 81.7%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 46.0 3.21e-01 100.0% 27.5%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 46.0 2.81e-01 96.2% 47.9%
1sfeA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.53 43.0 3.85e-01 100.0% 61.7%
4o32C00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.49e-01 88.7% 95.6%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 38.0 3.12e-01 84.9% 77.7%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 34.0 2.87e-01 71.7% 86.5%
3emxA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.33e-01 98.1% 83.9%
3f2kB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 41.0 2.96e-01 100.0% 68.9%
3orqA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 39.0 2.70e-01 88.7% 87.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979087 4100.1.1.7 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PF27115 0.66 49.0 4.51e-01 100.0% 61.4%
3782340 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 52.0 4.40e-01 96.2% 57.9%
1108069 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 50.0 4.48e-01 92.5% 65.8%
385833 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 44.0 3.62e-01 79.2% 86.8%
3236050 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.60 45.0 3.63e-01 83.0% 45.5%
3168807 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 44.0 3.60e-01 84.9% 50.5%
3931157 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 39.0 3.75e-01 73.6% 70.8%
4981935 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 3.45e-01 84.9% 40.0%
3808314 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 39.0 4.27e-01 77.4% 97.4%
135450 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.57 48.0 3.81e-01 100.0% 81.7%
3282007 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 39.0 3.69e-01 73.6% 67.7%
4973040 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.54 34.0 2.96e-01 90.6% 37.6%
4976249 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 42.0 3.28e-01 84.9% 40.9%
4557537 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.52 38.0 3.37e-01 84.9% 88.9%
3710528 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 40.0 3.04e-01 88.7% 70.0%
3640588 6043.2.1.0 ↗ a+b two layers › yfeY-like › Teichoic acid transporter subunit TagH C-terminal domain › Teichoic acid transporter subunit TagH C-terminal domain 0.52 35.0 2.86e-01 71.7% 36.8%
4133040 2484.2.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.51 41.0 3.74e-01 98.1% 96.2%
4341865 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.51 40.0 4.02e-01 96.2% 90.9%
3963958 2484.2.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.50 37.0 3.40e-01 86.8% 58.7%
3250933 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.50 39.0 3.19e-01 86.8% 81.0%