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KM236245.1__AIW03371.1__CPT_Mater214__00214

Bact-Vir

KM236245.1__AIW03371.1__CPT_Mater214__00214

Identity

Accession:
KM236245 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Matervirus› Bacillus_phage_Mater

TaxID: 1540090

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-62
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7b7tA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.66 46.0 3.38e-01 74.6% 48.4%
2m35A00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.64 46.0 4.87e-01 100.0% 88.5%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.64 41.0 3.96e-01 76.3% 58.2%
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.62 39.0 3.69e-01 91.5% 52.1%
1khcA02 1.10.720.50 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain 0.58 45.0 4.29e-01 88.1% 71.0%
4dmbB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 47.0 3.42e-01 98.3% 85.3%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.57 43.0 3.60e-01 81.4% 74.5%
1xt9A00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.56 44.0 3.05e-01 88.1% 89.4%
1qagA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.55 43.0 3.74e-01 94.9% 53.0%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 44.0 4.30e-01 96.6% 80.0%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 45.0 3.82e-01 94.9% 70.4%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.52 45.0 4.58e-01 98.3% 100.0%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.52 44.0 4.29e-01 96.6% 93.8%
6jlzA01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.51 43.0 3.66e-01 100.0% 57.4%
8d8lM01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 39.0 3.66e-01 100.0% 66.7%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.50 44.0 3.83e-01 100.0% 87.9%
2ou6A00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.50 40.0 2.88e-01 89.8% 44.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2643987 105.1.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.68 48.0 4.71e-01 74.6% 68.8%
4555084 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.59 45.0 4.31e-01 84.7% 98.6%
2100896 1180.1.1.1 ↗ alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP 0.58 49.0 4.72e-01 100.0% 82.1%
3366160 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.57 45.0 3.76e-01 88.1% 94.3%
3994879 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.56 42.0 3.65e-01 83.1% 72.6%
4663005 225.1.1.5 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HPTransfase 0.55 40.0 3.10e-01 100.0% 33.8%
4869998 829.1.1.0 ↗ a+b duplicates or obligate multimers › NinB › NinB › NinB 0.55 48.0 4.56e-01 100.0% 84.3%
3494941 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 45.0 4.43e-01 100.0% 95.4%
4980837 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.54 43.0 3.46e-01 89.8% 59.2%
3503207 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.53 45.0 3.81e-01 94.9% 70.4%
3716326 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.96e-01 100.0% 78.6%
4265829 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.52 43.0 4.08e-01 100.0% 81.3%
3713826 541.1.1.4 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Radial_spoke 0.52 41.0 4.11e-01 89.8% 86.7%
3839004 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.51 45.0 3.96e-01 100.0% 74.4%
4974419 102.1.2.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.51 42.0 2.89e-01 100.0% 30.0%