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KM236247.1__AIW03671.1__CPT_Pascal36__00036

Bact-Vir

KM236247.1__AIW03671.1__CPT_Pascal36__00036

Identity

Accession:
KM236247 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pagevirus› Bacillus_phage_Pascal

TaxID: 1540092

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-38
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 52.0 3.89e-01 78.8% 29.3%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.75 53.0 4.44e-01 84.8% 41.9%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 53.0 3.72e-01 78.8% 27.5%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 50.0 3.73e-01 81.8% 28.7%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.71 53.0 4.03e-01 100.0% 31.7%
2b0jA02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.71 49.0 3.57e-01 78.8% 26.1%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.67 48.0 3.71e-01 87.9% 33.3%
6rv2A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 44.0 2.65e-01 84.8% 9.8%
3o66B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 48.0 3.19e-01 100.0% 60.7%
1o4xA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 41.0 3.69e-01 81.8% 46.3%
1wxpA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.58 41.0 3.43e-01 97.0% 40.5%
1l8qA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 39.0 3.51e-01 75.8% 89.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3984938 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.79 54.0 4.04e-01 78.8% 30.0%
4163021 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.79 54.0 3.77e-01 78.8% 24.0%
3597193 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.78 54.0 3.29e-01 78.8% 13.0%
1866912 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.73 53.0 3.73e-01 78.8% 27.5%
4147304 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.72 58.0 5.00e-01 100.0% 65.0%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.72 58.0 4.90e-01 100.0% 61.9%
4020566 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.72 64.0 3.62e-01 100.0% 86.2%
354272 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.71 50.0 3.59e-01 81.8% 26.0%
5022467 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.70 53.0 3.72e-01 78.8% 28.0%
4665947 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.70 56.0 4.87e-01 100.0% 67.2%
4425883 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.70 53.0 4.70e-01 93.9% 69.1%
4939644 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 52.0 3.24e-01 100.0% 14.8%
4947306 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.65 48.0 3.70e-01 100.0% 33.0%
4466431 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.60 48.0 2.90e-01 100.0% 56.2%
D2 medium residues 48-86
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.68 47.0 3.75e-01 74.4% 92.6%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.18e-01 79.5% 67.4%
1ss3A00 1.10.287.720 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Pollen allergen ole e 6 0.51 37.0 3.53e-01 84.6% 62.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990647 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 49.0 4.35e-01 82.1% 52.7%
4034522 857.1.1.2 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PVL_ORF50 0.67 55.0 4.26e-01 100.0% 43.2%