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KM289195.1__AIU44385.1__T12_43__00043

Bact-Vir

KM289195.1__AIU44385.1__T12_43__00043

Identity

Accession:
KM289195 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptococcus_phage_T12

TaxID: 35344

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-96_148-158
PDB
Domain cluster: rep: IMGVR_UViG_3300028663_000009-3300028663-Ga0309993_1305197__D31-138_182-193
D2 high residues 99-146
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 44.0 3.53e-01 100.0% 31.8%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.69 56.0 4.70e-01 95.8% 56.2%
2zyzB02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 50.0 4.02e-01 83.3% 42.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.31e-01 77.1% 88.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.04e-01 83.3% 65.1%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.20e-01 77.1% 88.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 3.84e-01 77.1% 72.3%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 3.97e-01 77.1% 71.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.63 51.0 4.06e-01 93.8% 62.5%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.63 50.0 4.11e-01 93.8% 64.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.00e-01 79.2% 70.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 3.99e-01 75.0% 88.7%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 52.0 3.42e-01 100.0% 46.5%
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.60 49.0 3.37e-01 97.9% 50.3%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 47.0 3.44e-01 91.7% 89.4%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 34.0 3.64e-01 87.5% 61.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 3.89e-01 77.1% 81.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 3.81e-01 77.1% 84.8%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 3.36e-01 89.6% 42.3%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 46.0 2.76e-01 87.5% 44.9%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.58 47.0 3.06e-01 100.0% 75.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.58 45.0 3.92e-01 89.6% 72.2%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 40.0 2.99e-01 72.9% 31.2%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.57 43.0 3.12e-01 85.4% 58.0%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 45.0 3.25e-01 91.7% 99.4%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.57 44.0 3.36e-01 85.4% 48.3%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.56e-01 81.2% 91.4%
3bz5A02 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.91e-01 91.7% 90.0%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 39.0 3.27e-01 75.0% 79.3%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 41.0 3.07e-01 87.5% 74.5%
3mbhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 41.0 2.61e-01 85.4% 49.8%
4q97A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.55e-01 93.8% 87.0%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 37.0 3.00e-01 70.8% 33.3%
1apyB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.55 40.0 3.01e-01 83.3% 63.1%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.25e-01 100.0% 77.7%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 43.0 3.20e-01 89.6% 83.8%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.54 40.0 3.04e-01 87.5% 75.5%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 2.98e-01 100.0% 94.9%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.35e-01 89.6% 88.6%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.58e-01 100.0% 71.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 42.0 2.70e-01 91.7% 37.2%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 2.86e-01 89.6% 49.7%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 44.0 3.27e-01 95.8% 41.4%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.81e-01 100.0% 97.8%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 36.0 2.94e-01 79.2% 62.7%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.51 39.0 3.28e-01 93.8% 64.9%
2e1qC01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.50 38.0 3.18e-01 85.4% 52.2%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 40.0 3.15e-01 95.8% 77.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924626 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.72 42.0 3.46e-01 95.8% 32.9%
3991703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 41.0 3.65e-01 77.1% 40.0%
None — 0.69 57.0 3.29e-01 95.8% 10.6%
4882787 375.1.1.67 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N 0.68 46.0 4.66e-01 70.8% 74.5%
3505996 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.68 47.0 3.39e-01 70.8% 25.2%
3722885 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.66 45.0 2.64e-01 70.8% 43.3%
3851566 4099.1.1.20 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.65 51.0 3.73e-01 87.5% 34.1%
3341645 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.64 51.0 3.41e-01 89.6% 70.8%
4285345 4099.1.1.20 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.64 50.0 3.79e-01 89.6% 35.0%
4363805 292.2.1.9 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4 0.64 49.0 4.04e-01 85.4% 47.8%
3824262 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 50.0 3.37e-01 89.6% 70.8%
3385857 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.34e-01 93.8% 91.1%
608 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.63 51.0 4.06e-01 93.8% 62.5%
4862766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 3.71e-01 70.8% 48.1%
3575208 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.62 46.0 3.47e-01 83.3% 35.7%
3404871 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.62 46.0 3.65e-01 85.4% 93.6%
4221174 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.61 43.0 3.55e-01 75.0% 72.6%
3416462 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.61 41.0 4.21e-01 70.8% 75.6%
None — 0.61 49.0 3.17e-01 95.8% 93.7%
3239789 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 48.0 3.19e-01 89.6% 68.1%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 49.0 3.91e-01 91.7% 62.0%
3403072 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 46.0 3.65e-01 87.5% 56.4%
3459002 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.60 48.0 3.26e-01 91.7% 70.8%
3500755 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.59 40.0 2.72e-01 70.8% 17.6%
3939245 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 41.0 2.44e-01 72.9% 58.3%
3935168 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 44.0 2.80e-01 85.4% 28.4%
4017879 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.59 46.0 3.59e-01 93.8% 100.0%
3793126 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 45.0 2.83e-01 87.5% 23.1%
5052708 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.59 43.0 2.90e-01 85.4% 86.5%
4501626 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.59 47.0 2.69e-01 91.7% 26.3%
3356297 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 47.0 3.60e-01 97.9% 45.4%
3605358 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.58 49.0 2.92e-01 95.8% 88.7%
3986356 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.58 43.0 2.71e-01 83.3% 86.8%
4981041 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.58 39.0 3.95e-01 72.9% 100.0%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.01e-01 85.4% 75.4%
2769972 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 46.0 3.99e-01 100.0% 56.2%
4581150 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.57 45.0 2.97e-01 91.7% 61.7%
4009943 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 38.0 2.94e-01 70.8% 27.2%
3588046 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.57 43.0 2.75e-01 85.4% 85.0%
3580328 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.57 44.0 2.98e-01 91.7% 69.8%
4293129 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.57 43.0 2.78e-01 85.4% 49.6%
3995477 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.91e-01 95.8% 69.1%
1832709 10.2.1.41 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.56 47.0 4.47e-01 100.0% 90.0%
3928295 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 42.0 2.91e-01 87.5% 50.5%
4081797 3860.1.1.158 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.56 44.0 3.32e-01 95.8% 39.3%
3520418 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.55 42.0 3.09e-01 87.5% 74.7%
3615649 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 40.0 3.92e-01 83.3% 81.8%
3569505 11.1.1.363 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.55 43.0 3.56e-01 89.6% 89.5%
3796107 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.53 42.0 3.55e-01 91.7% 60.0%
3598259 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 44.0 3.33e-01 100.0% 38.5%
4416704 11.1.1.587 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VEGFR1-3_N_Ig-like 0.53 42.0 3.51e-01 93.8% 89.5%
4934001 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.53 42.0 3.19e-01 89.6% 75.2%
4011436 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 36.0 2.64e-01 70.8% 26.2%
4870150 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.53 41.0 3.14e-01 91.7% 70.9%
5045622 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.52 40.0 2.54e-01 89.6% 97.0%
4937307 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 40.0 2.91e-01 100.0% 98.9%
3101235 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 42.0 3.42e-01 97.9% 63.6%
5039218 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 38.0 2.95e-01 87.5% 73.8%
4004143 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.98e-01 87.5% 98.0%
3778104 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.51 41.0 3.44e-01 97.9% 75.0%
2442100 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.51 42.0 3.16e-01 100.0% 38.2%