←Back to structures

KM359505.1__AIR93619.1__X__00074

Bact-Vir

KM359505.1__AIR93619.1__X__00074

Identity

Accession:
KM359505 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Haifavirus› Prochlorococcus_phage_P-TIM68

TaxID: 1542477

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 4.61e-01 100.0% 59.8%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.64 44.0 4.09e-01 100.0% 57.4%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 3.21e-01 100.0% 23.7%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.94e-01 95.8% 51.4%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.60 48.0 2.90e-01 100.0% 56.0%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.60 48.0 2.86e-01 100.0% 55.9%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.68e-01 100.0% 46.9%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.59 47.0 2.84e-01 100.0% 58.2%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 52.0 4.98e-01 100.0% 83.9%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 40.0 3.25e-01 77.1% 58.3%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.56 38.0 3.52e-01 72.9% 68.7%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.94e-01 100.0% 63.0%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.26e-01 100.0% 33.3%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 37.0 2.35e-01 70.8% 57.1%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.28e-01 97.9% 33.8%
4fo9A01 2.60.120.780 Mainly Beta › Sandwich › Jelly Rolls › PINIT domain 0.54 43.0 3.26e-01 100.0% 54.9%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 2.50e-01 85.4% 70.8%
3uw2A01 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.52 39.0 2.78e-01 83.3% 82.6%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 42.0 3.60e-01 100.0% 76.7%
1qhxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 36.0 2.51e-01 75.0% 43.3%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.46e-01 100.0% 56.6%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.76e-01 100.0% 63.9%
4iu9B01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 35.0 2.36e-01 75.0% 65.2%
2mhhA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 41.0 3.47e-01 100.0% 67.7%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 43.0 2.80e-01 100.0% 95.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076753 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 4.85e-01 100.0% 87.8%
5070087 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 48.0 4.00e-01 100.0% 42.4%
3788382 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.64 50.0 4.27e-01 87.5% 80.0%
4933929 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.18e-01 95.8% 52.0%
4977918 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.64 49.0 3.94e-01 95.8% 43.2%
3801792 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.63 46.0 4.06e-01 100.0% 52.0%
3824428 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.63 45.0 3.35e-01 97.9% 29.2%
3287501 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 47.0 3.97e-01 100.0% 47.1%
3320650 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.62 49.0 3.88e-01 97.9% 42.0%
3310101 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.62 49.0 3.67e-01 100.0% 36.5%
5010519 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.61 46.0 3.84e-01 100.0% 44.2%
4970984 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.75e-01 97.9% 43.5%
4987460 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.61 48.0 4.25e-01 95.8% 95.0%
5054539 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 3.78e-01 93.8% 65.0%
3377235 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.05e-01 95.8% 83.2%
3829974 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.61 43.0 3.76e-01 97.9% 47.5%
4989447 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.60 48.0 4.08e-01 95.8% 85.4%
4974747 101.1.2.728 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31122 0.60 44.0 3.51e-01 85.4% 63.5%
3828246 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.60 47.0 3.70e-01 100.0% 39.1%
4929718 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.59e-01 85.4% 69.5%
5073726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.88e-01 100.0% 49.4%
4232456 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.60 48.0 3.88e-01 95.8% 74.3%
5062173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 3.72e-01 95.8% 61.7%
3347271 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.60 47.0 3.34e-01 100.0% 27.7%
4966120 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.59 45.0 3.95e-01 89.6% 90.0%
3626211 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.01e-01 100.0% 62.1%
3176868 129.1.1.102 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PF30133 0.59 47.0 3.36e-01 93.8% 51.2%
4961252 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 3.74e-01 100.0% 47.2%
4926938 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.05e-01 93.8% 91.3%
3822958 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.58 46.0 3.32e-01 97.9% 47.9%
4956415 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.58 45.0 3.34e-01 100.0% 32.5%
4945461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.53e-01 100.0% 43.2%
3266394 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.57 39.0 3.44e-01 77.1% 46.7%
5017363 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.57 38.0 2.48e-01 70.8% 33.8%
5077293 101.1.2.210 ↗ alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.56 42.0 3.43e-01 100.0% 40.0%
3270548 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.56 44.0 4.22e-01 100.0% 76.7%
3308386 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.56 44.0 3.04e-01 95.8% 40.0%
5074774 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.82e-01 95.8% 56.7%
5074949 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.68e-01 100.0% 50.0%
3307139 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.55 43.0 3.33e-01 95.8% 65.4%
4167856 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.55 41.0 3.60e-01 100.0% 50.6%
4882600 101.1.2.18 ↗ alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.55 42.0 3.22e-01 100.0% 33.1%
5047904 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.55 45.0 3.81e-01 100.0% 53.3%
3595242 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.51e-01 97.9% 50.0%
3281345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.83e-01 100.0% 97.5%
4994270 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 42.0 3.82e-01 100.0% 61.3%
3613572 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 38.0 3.58e-01 83.3% 100.0%
5062871 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.52e-01 95.8% 97.9%
3611141 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.53 41.0 3.58e-01 89.6% 81.2%
3716227 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.50e-01 97.9% 50.0%
3280479 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.53 39.0 3.33e-01 85.4% 78.9%
3520685 109.4.1.576 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 0.53 42.0 2.63e-01 97.9% 55.5%
4944651 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.03e-01 95.8% 51.0%
4962131 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.53 40.0 3.45e-01 95.8% 75.8%
5065138 101.1.2.222 ↗ alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.52 42.0 3.50e-01 97.9% 87.0%
4947701 101.1.2.882 ↗ alpha arrays › HTH › HTH › winged helix domain › FeoA 0.52 40.0 3.36e-01 100.0% 46.0%
4029683 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.52 39.0 2.26e-01 89.6% 43.7%
5053927 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.52 43.0 3.14e-01 100.0% 32.9%
3804069 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 39.0 3.39e-01 95.8% 84.2%
4022146 101.1.2.520 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.52 39.0 3.37e-01 97.9% 89.0%
4976799 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.41e-01 95.8% 81.1%
5017776 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.50 38.0 2.48e-01 85.4% 22.2%
2326885 101.1.2.543 ↗ alpha arrays › HTH › HTH › winged helix domain › AprA_N 0.50 39.0 3.39e-01 100.0% 76.3%