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KM359505.1__AIR93622.1__X__00077

Bact-Vir

KM359505.1__AIR93622.1__X__00077

Identity

Accession:
KM359505 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Haifavirus› Prochlorococcus_phage_P-TIM68

TaxID: 1542477

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-65
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.70 47.0 2.88e-01 70.3% 91.7%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 53.0 3.41e-01 89.1% 41.6%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 4.02e-01 85.9% 81.0%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.61 45.0 3.49e-01 79.7% 34.9%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.60 42.0 3.50e-01 100.0% 42.6%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.59 47.0 3.73e-01 92.2% 77.6%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 49.0 2.93e-01 93.8% 15.4%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 46.0 2.74e-01 87.5% 84.6%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 4.20e-01 76.6% 78.7%
1yx1A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 38.0 2.52e-01 87.5% 17.2%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 4.19e-01 92.2% 74.3%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.56 38.0 3.33e-01 71.9% 74.8%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 48.0 3.15e-01 100.0% 40.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.71e-01 73.4% 81.6%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 43.0 2.92e-01 90.6% 82.8%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 4.26e-01 79.7% 92.6%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.56 44.0 3.67e-01 89.1% 95.8%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 46.0 3.22e-01 92.2% 71.0%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.55 38.0 3.78e-01 71.9% 71.2%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 42.0 3.48e-01 81.2% 86.2%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.54 38.0 3.26e-01 73.4% 63.8%
4qqsB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.01e-01 100.0% 62.9%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 38.0 2.36e-01 82.8% 12.0%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.16e-01 81.2% 83.7%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.92e-01 92.2% 22.5%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 41.0 2.65e-01 84.4% 54.3%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 40.0 2.88e-01 87.5% 35.0%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 40.0 3.92e-01 89.1% 77.1%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 41.0 3.30e-01 90.6% 78.6%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.26e-01 89.1% 77.0%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 39.0 3.31e-01 81.2% 85.2%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.80e-01 95.3% 25.0%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.52e-01 98.4% 91.9%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.60e-01 78.1% 86.1%
4bbyA02 3.30.160.650 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 32.0 3.57e-01 75.0% 95.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4208333 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 51.0 4.25e-01 85.9% 75.8%
3228256 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.64 50.0 3.28e-01 84.4% 27.2%
3885623 101.1.8.12 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.61 42.0 3.01e-01 71.9% 31.1%
3430159 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.61 41.0 4.06e-01 70.3% 75.0%
4003932 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.60 44.0 3.59e-01 78.1% 54.2%
4284001 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.59 40.0 3.84e-01 70.3% 94.7%
3743614 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 44.0 4.51e-01 82.8% 91.7%
4349950 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 36.0 3.69e-01 76.6% 65.0%
3935116 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.57 44.0 4.44e-01 85.9% 87.7%
3404149 206.1.1.19 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fam20C 0.56 40.0 2.52e-01 96.9% 12.9%
3881395 101.1.8.12 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.56 39.0 2.94e-01 73.4% 34.9%
3594618 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.56 47.0 3.51e-01 100.0% 80.5%
3288034 66.1.1.2 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.56 44.0 3.61e-01 85.9% 72.5%
3665094 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.09e-01 100.0% 43.6%
3220597 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.56 43.0 2.56e-01 93.8% 9.5%
3456571 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 51.0 3.29e-01 100.0% 33.0%
3622024 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.56 42.0 4.32e-01 90.6% 91.7%
3772242 101.1.8.12 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3504 0.56 39.0 2.88e-01 73.4% 35.1%
3217527 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 42.0 3.13e-01 89.1% 77.3%
3170740 220.1.1.83 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.54 47.0 3.42e-01 100.0% 75.8%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 3.67e-01 93.8% 92.2%
3392311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.46e-01 100.0% 61.8%
3517706 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.53 41.0 3.07e-01 89.1% 74.2%
3960850 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.53 36.0 3.77e-01 75.0% 78.0%
3179640 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.53 43.0 3.48e-01 95.3% 96.4%
3691661 220.1.1.83 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_N 0.53 46.0 3.35e-01 100.0% 77.2%
3957119 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 3.03e-01 92.2% 69.3%
5022797 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.51 40.0 2.83e-01 87.5% 45.6%
4110965 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 40.0 3.29e-01 95.3% 80.7%
3652231 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 42.0 2.71e-01 90.6% 54.2%
3996624 5.1.5.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.50 44.0 2.75e-01 100.0% 40.5%
3712058 2484.1.1.72 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF 0.50 40.0 3.10e-01 92.2% 65.0%
3506540 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.50 43.0 3.64e-01 100.0% 92.2%