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KM378617.2__AIM40577.1__X__00074
Bact-VirKM378617.2__AIM40577.1__X__00074
Identity
- Accession:
- KM378617 ↗
- Kingdom:
- phage
Quality
84.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-85
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g0tA02 | 6.10.120.10 | Special › Helix non-globular › 434 Repressor (Amino-terminal Domain) › Bacterial aspartate aminotransferase, helical domain | 0.70 | 43.0 | 4.54e-01 | 98.8% | 70.0% |
| 6tqpA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.64 | 50.0 | 4.24e-01 | 85.0% | 100.0% |
| 4m7cB00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.59 | 42.0 | 3.18e-01 | 75.0% | 92.4% |
| 3b8bA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.58 | 48.0 | 3.84e-01 | 91.3% | 99.4% |
| 5xdcB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 42.0 | 3.86e-01 | 81.2% | 75.7% |
| 1kf6A03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.56 | 38.0 | 3.37e-01 | 70.0% | 75.8% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 34.0 | 2.85e-01 | 73.8% | 38.2% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.54 | 43.0 | 3.76e-01 | 88.7% | 93.6% |
| 3lzhA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 36.0 | 2.75e-01 | 70.0% | 76.1% |
| 3dv9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 33.0 | 3.50e-01 | 82.5% | 71.4% |
| 3op0A01 | 1.20.930.20 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain | 0.52 | 43.0 | 3.58e-01 | 88.7% | 61.0% |
| 1jmuB03 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.52 | 46.0 | 3.70e-01 | 100.0% | 82.2% |
| 3cuxA02 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.52 | 36.0 | 3.16e-01 | 72.5% | 81.8% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.52 | 37.0 | 3.35e-01 | 77.5% | 86.3% |
| 1z3iX03 | 1.20.120.850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain | 0.52 | 34.0 | 3.19e-01 | 91.3% | 54.5% |
| 3rpzA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 43.0 | 2.98e-01 | 92.5% | 89.5% |
| 1br2A03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.51 | 38.0 | 3.65e-01 | 81.2% | 75.8% |
| 3wd6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 38.0 | 3.34e-01 | 78.8% | 75.4% |
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.51 | 38.0 | 3.35e-01 | 80.0% | 71.8% |
| 2f2bA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.51 | 44.0 | 3.21e-01 | 100.0% | 50.6% |
| 3lftA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 42.0 | 3.41e-01 | 90.0% | 79.9% |
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.50 | 43.0 | 3.12e-01 | 100.0% | 96.5% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.50 | 38.0 | 3.65e-01 | 92.5% | 69.1% |
| 2bjnB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.50 | 34.0 | 2.84e-01 | 71.2% | 45.3% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5057640 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.66 | 52.0 | 3.27e-01 | 83.7% | 39.0% |
| 3243678 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.62 | 46.0 | 4.01e-01 | 80.0% | 52.0% |
| 4958888 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.60 | 51.0 | 3.55e-01 | 98.8% | 74.7% |
| 3929356 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 34.0 | 3.24e-01 | 100.0% | 46.3% |
| 3590438 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.59 | 42.0 | 3.68e-01 | 76.2% | 88.5% |
| 4026107 | 4207.1.2.47 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RIFIN | 0.58 | 46.0 | 3.37e-01 | 83.7% | 45.9% |
| 3637397 | 101.1.2.147 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC4_C | 0.56 | 40.0 | 3.26e-01 | 73.8% | 98.0% |
| 5026386 | 3636.1.1.1 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › HBB | 0.56 | 39.0 | 3.20e-01 | 71.2% | 48.6% |
| 3912626 | 197.1.1.1 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M | 0.56 | 40.0 | 3.34e-01 | 76.2% | 74.3% |
| 3390532 | 193.1.1.41 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › WHIM1 | 0.55 | 48.0 | 3.67e-01 | 100.0% | 99.0% |
| 3937183 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 41.0 | 3.38e-01 | 80.0% | 46.2% |
| 3308985 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.54 | 48.0 | 4.47e-01 | 100.0% | 81.0% |
| 3410758 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.52 | 45.0 | 2.91e-01 | 100.0% | 73.0% |
| 3490912 | 109.4.1.469 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS15 | 0.51 | 44.0 | 2.84e-01 | 100.0% | 43.6% |
| 3587045 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.50 | 44.0 | 3.01e-01 | 98.8% | 86.7% |