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KM378617.2__AIM40604.1__X__00020
Bact-VirKM378617.2__AIM40604.1__X__00020
Identity
- Accession:
- KM378617 ↗
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-129
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05037.19 best | DUF669 | 59.7 | 4.90e-16 | 100.0% | 81.9% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ne3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 41.0 | 5.02e-01 | 88.8% | 91.2% |
| 6ro0F00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 52.0 | 5.43e-01 | 100.0% | 88.8% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.68 | 32.0 | 3.58e-01 | 87.9% | 57.1% |
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 48.0 | 5.14e-01 | 100.0% | 92.2% |
| 3nppA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.64 | 39.0 | 4.29e-01 | 100.0% | 74.7% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 48.0 | 4.66e-01 | 100.0% | 72.4% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.63 | 32.0 | 4.02e-01 | 88.8% | 84.7% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 51.0 | 4.13e-01 | 100.0% | 45.4% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 47.0 | 5.01e-01 | 100.0% | 93.3% |
| 4jbmB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 45.0 | 4.70e-01 | 100.0% | 82.3% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.62 | 32.0 | 3.96e-01 | 88.8% | 81.0% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 52.0 | 5.13e-01 | 100.0% | 86.1% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 49.0 | 5.09e-01 | 100.0% | 91.9% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 46.0 | 4.45e-01 | 100.0% | 70.2% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.61 | 35.0 | 3.80e-01 | 94.4% | 67.8% |
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 47.0 | 4.83e-01 | 100.0% | 89.0% |
| 2gaiA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.60 | 46.0 | 4.38e-01 | 88.8% | 69.9% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 36.0 | 3.41e-01 | 100.0% | 48.8% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.59 | 29.0 | 3.57e-01 | 89.7% | 78.3% |
| 1ddgA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 47.0 | 4.62e-01 | 86.0% | 94.7% |
| 2z7rA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 38.0 | 4.16e-01 | 99.1% | 83.3% |
| 1e62A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 45.0 | 4.27e-01 | 83.2% | 95.3% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 29.0 | 3.82e-01 | 87.9% | 92.9% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 44.0 | 4.54e-01 | 100.0% | 90.8% |
| 5hp6A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 37.0 | 2.65e-01 | 89.7% | 21.2% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 44.0 | 4.55e-01 | 100.0% | 87.4% |
| 4gxbA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 34.0 | 3.49e-01 | 76.6% | 61.5% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 46.0 | 4.47e-01 | 90.7% | 95.9% |
| 5uj1A03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.56 | 46.0 | 3.92e-01 | 88.8% | 59.6% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 43.0 | 4.28e-01 | 83.2% | 95.5% |
| 1o7iB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 44.0 | 4.38e-01 | 100.0% | 82.5% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 33.0 | 3.12e-01 | 94.4% | 50.8% |
| 4dqlB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 45.0 | 4.50e-01 | 91.6% | 97.2% |
| 1lc0A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 37.0 | 3.36e-01 | 72.9% | 89.1% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.53 | 31.0 | 2.50e-01 | 94.4% | 25.6% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 32.0 | 3.48e-01 | 97.2% | 74.2% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 40.0 | 3.75e-01 | 82.2% | 83.8% |
| 3hpcX00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 43.0 | 3.81e-01 | 92.5% | 91.0% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 43.0 | 4.15e-01 | 93.5% | 94.3% |
| 2i4kA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 42.0 | 4.05e-01 | 95.3% | 98.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964606 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 73.0 | 6.11e-01 | 100.0% | 71.8% |
| 3970846 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 47.0 | 5.38e-01 | 98.1% | 82.5% |
| 4033192 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 68.0 | 6.37e-01 | 100.0% | 78.5% |
| 4593266 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.76 | 45.0 | 5.32e-01 | 99.1% | 84.0% |
| 4930846 | 2.1.1.12 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e | 0.71 | 40.0 | 5.14e-01 | 94.4% | 98.3% |
| 3961045 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 48.0 | 4.98e-01 | 100.0% | 76.0% |
| 3716770 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.68 | 44.0 | 4.45e-01 | 99.1% | 65.7% |
| 4932581 | 2.1.1.12 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e | 0.68 | 39.0 | 4.81e-01 | 94.4% | 92.3% |
| 3784708 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.68 | 47.0 | 5.15e-01 | 100.0% | 89.4% |
| 5046188 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 45.0 | 5.20e-01 | 99.1% | 97.3% |
| 3287532 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 48.0 | 5.02e-01 | 100.0% | 81.0% |
| 3289386 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 46.0 | 4.99e-01 | 99.1% | 85.2% |
| 3616990 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 50.0 | 5.04e-01 | 99.1% | 78.2% |
| 3285634 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 44.0 | 4.74e-01 | 97.2% | 81.1% |
| 3931744 | 2.1.1.141 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB | 0.64 | 49.0 | 4.42e-01 | 100.0% | 58.7% |
| 3997678 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 50.0 | 4.99e-01 | 100.0% | 80.9% |
| 3955464 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 45.0 | 4.89e-01 | 100.0% | 88.9% |
| 3194612 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.63 | 47.0 | 4.24e-01 | 100.0% | 57.9% |
| 3445705 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 32.0 | 3.75e-01 | 94.4% | 71.4% |
| 3297966 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.62 | 42.0 | 4.03e-01 | 72.0% | 61.7% |
| 3285635 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 46.0 | 4.83e-01 | 100.0% | 87.4% |
| 4375028 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.61 | 47.0 | 4.50e-01 | 87.9% | 69.6% |
| 4032024 | 2.1.1.335 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29902 | 0.61 | 47.0 | 4.94e-01 | 100.0% | 91.6% |
| 3678038 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.61 | 41.0 | 4.71e-01 | 93.5% | 98.7% |
| 2541776 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.59 | 48.0 | 4.78e-01 | 100.0% | 86.2% |
| 4964647 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 45.0 | 4.81e-01 | 100.0% | 97.8% |
| 5055184 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 34.0 | 3.71e-01 | 97.2% | 69.4% |
| 4047115 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.59 | 48.0 | 4.95e-01 | 100.0% | 95.0% |
| 3618300 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 47.0 | 4.45e-01 | 86.9% | 86.2% |
| 3406278 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 46.0 | 4.36e-01 | 85.0% | 82.3% |
| 3968468 | 4152.2.1.0 ↗ | a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 | 0.57 | 37.0 | 4.29e-01 | 98.1% | 93.3% |
| 5055376 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 41.0 | 2.99e-01 | 99.1% | 27.2% |
| 4934871 | 2.1.1.368 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arcadin_1 | 0.56 | 52.0 | 5.17e-01 | 99.1% | 99.1% |
| 3512431 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 44.0 | 3.98e-01 | 85.0% | 87.6% |
| 5057921 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.55 | 31.0 | 2.41e-01 | 91.6% | 22.6% |
| 5079533 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 30.0 | 2.45e-01 | 90.7% | 26.0% |
| 3269706 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 35.0 | 3.95e-01 | 99.1% | 88.7% |
| 3716709 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 46.0 | 4.42e-01 | 100.0% | 82.1% |
| 3564807 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 45.0 | 4.03e-01 | 93.5% | 79.4% |
| 3718166 | 2.1.1.105 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB | 0.53 | 41.0 | 4.08e-01 | 100.0% | 77.4% |
| 3894481 | 277.1.1.5 ↗ | a+b two layers › PX domain › PX domain › PX domain › Vps5 | 0.53 | 44.0 | 3.10e-01 | 92.5% | 34.6% |
| 3285903 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.53 | 47.0 | 4.14e-01 | 96.3% | 78.7% |
| 3841771 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 44.0 | 4.03e-01 | 93.5% | 83.3% |
| 4994978 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 37.0 | 2.69e-01 | 72.0% | 87.7% |
| 4890846 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 34.0 | 2.45e-01 | 93.5% | 20.8% |
| 4072295 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.52 | 44.0 | 3.03e-01 | 93.5% | 32.4% |
| 3961460 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 46.0 | 4.09e-01 | 100.0% | 68.0% |
| 3903091 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.52 | 44.0 | 3.06e-01 | 94.4% | 31.8% |
| 1930750 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 44.0 | 3.93e-01 | 93.5% | 80.0% |
| 3363098 | 295.1.1.5 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly | 0.52 | 31.0 | 3.13e-01 | 91.6% | 58.1% |
| 3516854 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 34.0 | 3.33e-01 | 99.1% | 60.9% |
| 5027780 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.51 | 28.0 | 3.49e-01 | 75.7% | 93.3% |
| 3283746 | 330.1.1.16 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6968 | 0.51 | 34.0 | 3.77e-01 | 97.2% | 90.0% |