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KM514685.1__AIS73891.1__LDL_033__00033
Bact-VirKM514685.1__AIS73891.1__LDL_033__00033
Identity
- Accession:
- KM514685 ↗
- Kingdom:
- phage
Quality
72.6
mean pLDDT
Taxonomy
TaxID: 1552735
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-113
Domain cluster:
rep: FN538971.1__CBA18123.1__X__00003__D8-124
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.73 | 53.0 | 5.54e-01 | 86.0% | 82.6% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.70 | 46.0 | 5.06e-01 | 83.0% | 82.7% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 51.0 | 5.12e-01 | 87.0% | 77.5% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.68 | 49.0 | 5.04e-01 | 79.0% | 79.8% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.68 | 48.0 | 5.02e-01 | 74.0% | 82.4% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.67 | 52.0 | 5.05e-01 | 85.0% | 75.2% |
| 6nplA01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.67 | 47.0 | 3.00e-01 | 73.0% | 65.7% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 47.0 | 5.14e-01 | 74.0% | 100.0% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 38.0 | 4.10e-01 | 73.0% | 65.9% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.66 | 40.0 | 4.09e-01 | 72.0% | 63.5% |
| 1tf5A04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.64 | 45.0 | 3.73e-01 | 73.0% | 95.1% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.63 | 47.0 | 3.36e-01 | 79.0% | 51.8% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 48.0 | 3.96e-01 | 82.0% | 48.3% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 44.0 | 3.65e-01 | 76.0% | 68.2% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 42.0 | 4.06e-01 | 73.0% | 89.5% |
| 1ldjA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.60 | 44.0 | 4.29e-01 | 80.0% | 71.3% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.59 | 35.0 | 4.15e-01 | 80.0% | 91.9% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 46.0 | 4.86e-01 | 88.0% | 93.3% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.57 | 45.0 | 4.78e-01 | 92.0% | 98.8% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 41.0 | 4.26e-01 | 82.0% | 79.2% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.57 | 40.0 | 3.73e-01 | 72.0% | 60.0% |
| 7dl9A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.57 | 50.0 | 4.08e-01 | 100.0% | 94.3% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.56 | 40.0 | 4.03e-01 | 80.0% | 72.4% |
| 4jioA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.56 | 40.0 | 3.46e-01 | 75.0% | 75.2% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.56 | 46.0 | 3.90e-01 | 91.0% | 74.7% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.55 | 40.0 | 4.06e-01 | 81.0% | 78.1% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.55 | 48.0 | 3.30e-01 | 100.0% | 88.8% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 35.0 | 3.88e-01 | 75.0% | 85.1% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.55 | 42.0 | 4.04e-01 | 82.0% | 79.6% |
| 4dvyP01 | 1.10.357.130 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.55 | 47.0 | 3.84e-01 | 98.0% | 84.3% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.54 | 38.0 | 3.98e-01 | 77.0% | 79.8% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.54 | 41.0 | 4.11e-01 | 79.0% | 89.0% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 38.0 | 3.64e-01 | 73.0% | 64.1% |
| 3m9vA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 41.0 | 3.82e-01 | 82.0% | 64.6% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 48.0 | 3.55e-01 | 100.0% | 86.8% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 38.0 | 4.16e-01 | 85.0% | 94.9% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.53 | 40.0 | 3.23e-01 | 81.0% | 74.9% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 35.0 | 3.47e-01 | 74.0% | 64.2% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 3.60e-01 | 85.0% | 92.9% |
| 1cqxA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 42.0 | 3.75e-01 | 89.0% | 90.7% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 3.77e-01 | 88.0% | 96.5% |
| 3hhcC00 | 1.20.1250.60 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda | 0.52 | 45.0 | 3.97e-01 | 99.0% | 94.0% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.51 | 39.0 | 3.68e-01 | 82.0% | 91.2% |
| 6adqG01 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.51 | 41.0 | 3.46e-01 | 90.0% | 89.9% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 34.0 | 3.47e-01 | 71.0% | 82.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029931 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 50.0 | 5.83e-01 | 85.0% | 97.1% |
| 3945879 | 101.38.1.4 ↗ | alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 | 0.73 | 53.0 | 5.14e-01 | 79.0% | 69.1% |
| 5060833 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.72 | 61.0 | 4.08e-01 | 93.0% | 47.4% |
| 4329001 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.72 | 62.0 | 4.26e-01 | 94.0% | 73.1% |
| 4090711 | 5067.1.1.8 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › HPP | 0.70 | 62.0 | 5.27e-01 | 96.0% | 60.0% |
| 4965896 | 7099.1.1.1 ↗ | a+b complex topology › VP5 N-terminal domain › VP5 N-terminal domain › VP5 N-terminal domain › Viral_env_HRPV | 0.70 | 53.0 | 3.71e-01 | 79.0% | 80.0% |
| 3916954 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.68 | 52.0 | 4.62e-01 | 81.0% | 99.3% |
| 4093066 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.68 | 51.0 | 5.58e-01 | 89.0% | 98.8% |
| 5079588 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.68 | 51.0 | 5.35e-01 | 80.0% | 97.8% |
| 4965185 | 7099.1.1.1 ↗ | a+b complex topology › VP5 N-terminal domain › VP5 N-terminal domain › VP5 N-terminal domain › Viral_env_HRPV | 0.66 | 50.0 | 3.50e-01 | 80.0% | 85.2% |
| 3950977 | 5058.1.1.9 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V | 0.63 | 55.0 | 4.76e-01 | 97.0% | 99.4% |
| 3386017 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.62 | 46.0 | 3.67e-01 | 79.0% | 82.6% |
| 3388668 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.59 | 43.0 | 4.52e-01 | 77.0% | 100.0% |
| 3784532 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 44.0 | 4.49e-01 | 78.0% | 98.9% |
| 3513473 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 43.0 | 3.73e-01 | 82.0% | 50.7% |
| 3704156 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.57 | 49.0 | 3.98e-01 | 93.0% | 71.4% |
| 3922607 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 44.0 | 4.49e-01 | 85.0% | 100.0% |
| 3925909 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.55 | 43.0 | 4.35e-01 | 92.0% | 85.0% |
| 4290275 | 4952.1.1.1 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 | 0.55 | 39.0 | 3.87e-01 | 81.0% | 68.2% |
| 4979956 | 3236.1.1.5 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 | 0.54 | 45.0 | 3.08e-01 | 95.0% | 41.0% |
| 3497591 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 41.0 | 2.96e-01 | 81.0% | 76.6% |
| 4213337 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.53 | 37.0 | 3.77e-01 | 77.0% | 72.0% |
| 3218140 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.53 | 41.0 | 3.01e-01 | 83.0% | 88.6% |
| 4952257 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.53 | 40.0 | 3.97e-01 | 80.0% | 93.3% |
| 3382066 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.52 | 39.0 | 3.72e-01 | 81.0% | 95.2% |
| 3607406 | 6026.1.1.0 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain | 0.52 | 36.0 | 3.88e-01 | 78.0% | 88.7% |
| 4291782 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.52 | 37.0 | 3.67e-01 | 81.0% | 68.2% |
| 3242106 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.52 | 28.0 | 2.67e-01 | 77.0% | 40.8% |
| 3777032 | 5054.1.1.11 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › SK_channel | 0.51 | 40.0 | 3.12e-01 | 83.0% | 94.5% |
| 3629933 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.51 | 44.0 | 3.74e-01 | 98.0% | 61.1% |
| 4946487 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.51 | 45.0 | 3.33e-01 | 99.0% | 43.1% |
| 3602716 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.50 | 38.0 | 3.59e-01 | 82.0% | 97.6% |