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KM514685.1__AIS73902.1__LDL_044__00044

Bact-Vir

KM514685.1__AIS73902.1__LDL_044__00044

Identity

Accession:
KM514685 ↗
Kingdom:
phage

Quality

85.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lidleunavirus› Lactobacillus_phage_Ldl1

TaxID: 1552735

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-105
PDB
Domain cluster: rep: OK896991.1__UDY80742.1__X__00073__D5-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02452.24 best PemK_toxin 48.6 1.20e-12 96.9% 90.8%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.91 86.0 8.06e-01 100.0% 91.4%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.86 81.0 7.89e-01 100.0% 96.2%
5hk0B00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.83 79.0 7.63e-01 100.0% 93.5%
5uctB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.83 76.0 7.58e-01 100.0% 95.0%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.83 77.0 6.48e-01 100.0% 83.1%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.82 74.0 7.27e-01 100.0% 90.3%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.80 70.0 7.11e-01 100.0% 94.8%
4atoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.77 71.0 5.84e-01 100.0% 78.0%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 40.0 5.39e-01 79.4% 100.0%
4glkA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.73 67.0 5.56e-01 100.0% 80.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 40.0 5.15e-01 79.4% 98.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 4.97e-01 82.5% 84.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 40.0 4.92e-01 78.4% 96.7%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 38.0 4.70e-01 80.4% 96.7%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.61 34.0 3.41e-01 81.4% 52.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.60 42.0 4.63e-01 91.8% 90.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 36.0 4.18e-01 79.4% 88.1%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.98e-01 80.4% 68.7%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.57 52.0 4.66e-01 97.9% 72.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 34.0 4.08e-01 78.4% 98.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.79e-01 93.8% 61.4%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.33e-01 84.5% 60.0%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.34e-01 75.3% 74.6%
5nqdA01 3.30.200.200 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.51 35.0 2.97e-01 72.2% 79.7%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4667326 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.92 88.0 8.23e-01 100.0% 92.2%
3955562 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.92 87.0 8.46e-01 100.0% 95.2%
5045554 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.91 87.0 7.99e-01 100.0% 89.9%
1109151 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.91 86.0 7.94e-01 100.0% 88.3%
2643543 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.90 86.0 7.82e-01 100.0% 90.2%
2832038 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.89 85.0 7.92e-01 100.0% 89.6%
3587639 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.89 84.0 8.09e-01 100.0% 93.5%
4950222 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.88 83.0 7.96e-01 100.0% 93.6%
4034169 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.88 83.0 7.11e-01 100.0% 74.3%
4267554 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.88 83.0 7.82e-01 100.0% 93.8%
4008775 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.87 82.0 7.11e-01 100.0% 95.7%
4645229 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.87 82.0 7.84e-01 100.0% 93.6%
4928262 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.86 82.0 7.82e-01 100.0% 95.5%
2125775 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.86 77.0 7.50e-01 100.0% 87.5%
5062749 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.85 81.0 7.58e-01 100.0% 93.0%
3955085 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.84 79.0 7.84e-01 99.0% 96.0%
1952922 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.84 80.0 7.62e-01 100.0% 93.6%
3959465 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.83 78.0 6.97e-01 100.0% 78.5%
2046239 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.83 76.0 7.58e-01 100.0% 95.0%
1688342 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 77.0 6.47e-01 100.0% 82.6%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.82 76.0 7.51e-01 100.0% 95.0%
3290347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 74.0 7.44e-01 100.0% 94.9%
5012680 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.81 76.0 7.28e-01 100.0% 95.5%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.81 76.0 6.32e-01 100.0% 89.4%
4938225 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.81 77.0 7.45e-01 100.0% 96.2%
4961922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 76.0 7.29e-01 100.0% 93.6%
3728463 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.81 75.0 6.03e-01 99.0% 91.4%
3502443 4.1.1.23 ↗ beta barrels › SH3 › SH3 › SH3 › CcdB 0.81 74.0 7.39e-01 100.0% 95.0%
2507392 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.81 75.0 7.16e-01 100.0% 87.5%
3955877 4.1.1.432 ↗ beta barrels › SH3 › SH3 › SH3 › PF27466 0.79 73.0 7.22e-01 100.0% 95.0%
3694663 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.79 73.0 5.98e-01 100.0% 93.5%
4950603 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.79 74.0 6.96e-01 100.0% 90.4%
4969376 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.78 72.0 6.72e-01 100.0% 91.5%
154942 4.1.1.88 ↗ beta barrels › SH3 › SH3 › SH3 › ToxN_toxin 0.73 67.0 5.56e-01 100.0% 80.6%
137260 4.1.1.23 ↗ beta barrels › SH3 › SH3 › SH3 › CcdB 0.73 66.0 6.48e-01 100.0% 95.2%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 46.0 4.91e-01 80.4% 74.1%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 42.0 5.09e-01 79.4% 89.1%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 44.0 4.97e-01 81.4% 86.7%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 45.0 3.89e-01 81.4% 44.8%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 45.0 5.08e-01 81.4% 92.0%
3755099 604.1.1.97 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SH3_1 0.62 38.0 4.11e-01 80.4% 70.6%
3700378 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 36.0 4.42e-01 78.4% 91.7%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.62 45.0 4.06e-01 93.8% 54.8%
3257650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.74e-01 90.7% 89.4%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.57 47.0 4.28e-01 89.7% 73.8%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 35.0 3.97e-01 82.5% 85.7%
4951886 3174.4.1.0 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.56 38.0 3.95e-01 76.3% 74.4%
3315510 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.56 45.0 4.35e-01 85.6% 82.7%
3339162 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.56 47.0 4.29e-01 91.8% 73.1%
3487342 5.1.5.50 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › MIOS_WD40 0.55 45.0 2.95e-01 88.7% 88.8%
3255397 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.06e-01 95.9% 74.8%
3022070 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.54 41.0 3.88e-01 79.4% 69.3%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.53 39.0 3.89e-01 79.4% 74.0%
4961490 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.53 36.0 3.30e-01 71.1% 63.6%
3278698 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.64e-01 77.3% 84.8%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 43.0 3.22e-01 90.7% 42.7%