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KM591905.1__AIT13468.1__PBI_RONRAYGUN_55__00055
Bact-VirKM591905.1__AIT13468.1__PBI_RONRAYGUN_55__00055
Identity
- Accession:
- KM591905 ↗
- Kingdom:
- phage
Quality
58.8
mean pLDDT
Taxonomy
TaxID: 1555234
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-47
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.66 | 56.0 | 4.55e-01 | 100.0% | 59.8% |
| 3l2pA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.66 | 45.0 | 3.30e-01 | 100.0% | 26.7% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.57 | 43.0 | 4.26e-01 | 100.0% | 79.6% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.56 | 40.0 | 4.24e-01 | 100.0% | 94.6% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 41.0 | 3.35e-01 | 88.9% | 59.6% |
| 4qclA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 45.0 | 3.35e-01 | 93.3% | 78.4% |
| 3dadA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.53 | 38.0 | 2.37e-01 | 84.4% | 18.8% |
| 2cklB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 39.0 | 3.58e-01 | 100.0% | 63.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4186857 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.85 | 62.0 | 6.48e-01 | 100.0% | 87.5% |
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.84 | 60.0 | 6.32e-01 | 100.0% | 87.5% |
| 3455781 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 44.0 | 4.40e-01 | 73.3% | 60.0% |
| 3408086 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 52.0 | 5.22e-01 | 100.0% | 86.7% |
| 3246864 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.65 | 51.0 | 3.84e-01 | 100.0% | 34.8% |
| 3217481 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 48.0 | 5.00e-01 | 100.0% | 92.5% |
| 3499017 | 822.2.1.0 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like | 0.61 | 42.0 | 3.64e-01 | 73.3% | 71.4% |
| 4519945 | 101.1.14.4 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 | 0.61 | 50.0 | 4.81e-01 | 100.0% | 98.1% |
| 3719535 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 41.0 | 2.44e-01 | 80.0% | 24.9% |
| 3747259 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.58 | 43.0 | 4.04e-01 | 100.0% | 65.0% |
| 4885815 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 48.0 | 4.53e-01 | 95.6% | 100.0% |
| 3762458 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 41.0 | 3.37e-01 | 86.7% | 52.0% |
| 3872106 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.56 | 43.0 | 4.11e-01 | 100.0% | 70.9% |
| 3571832 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 43.0 | 4.11e-01 | 100.0% | 70.9% |
| 3225862 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.55 | 44.0 | 3.70e-01 | 100.0% | 51.2% |
| 3553551 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.55 | 39.0 | 3.28e-01 | 84.4% | 52.6% |
| 3689809 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 41.0 | 4.15e-01 | 100.0% | 95.6% |
| 5049794 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.54 | 46.0 | 3.28e-01 | 100.0% | 31.0% |
| 4979507 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.54 | 44.0 | 3.20e-01 | 100.0% | 30.2% |
| 5068907 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 41.0 | 4.19e-01 | 100.0% | 88.9% |
| 3665223 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.50 | 39.0 | 3.12e-01 | 95.6% | 41.0% |
| 4682922 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 43.0 | 3.97e-01 | 100.0% | 100.0% |
D2
medium
residues 52-110
Domain cluster:
rep: NC_054443.1__YP_010051534.1__KDW73_gp62__00062__D55-97