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KM879221.2__AIU44264.1__RG2014_010__00010

Bact-Vir

KM879221.2__AIU44264.1__RG2014_010__00010

Identity

Accession:
KM879221 ↗
Kingdom:
phage

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 58.0 5.04e-01 87.1% 54.8%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.70 50.0 3.82e-01 75.8% 36.3%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 49.0 4.78e-01 88.7% 66.7%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.70 55.0 4.25e-01 85.5% 56.0%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 58.0 4.44e-01 91.9% 61.7%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.66 48.0 3.78e-01 96.8% 38.2%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 48.0 3.36e-01 85.5% 45.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 55.0 3.91e-01 96.8% 59.4%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 52.0 3.36e-01 91.9% 49.2%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.62 44.0 3.71e-01 75.8% 44.4%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 50.0 3.67e-01 91.9% 61.6%
3ltiA01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.61 51.0 3.82e-01 95.2% 63.6%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 50.0 3.18e-01 91.9% 34.4%
8gzhC01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.61 50.0 3.66e-01 95.2% 58.0%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 49.0 3.65e-01 90.3% 77.3%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.60 44.0 3.29e-01 79.0% 59.9%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 49.0 3.19e-01 90.3% 36.8%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.25e-01 87.1% 38.4%
4nvrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 42.0 2.69e-01 75.8% 67.2%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.58 40.0 3.19e-01 71.0% 56.3%
1zarA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 39.0 3.64e-01 71.0% 97.5%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 43.0 4.23e-01 82.3% 95.7%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 39.0 2.51e-01 71.0% 23.9%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.57 46.0 2.99e-01 88.7% 81.9%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 47.0 3.00e-01 91.9% 34.6%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 43.0 2.80e-01 87.1% 16.2%
3apqA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 46.0 3.85e-01 93.5% 98.3%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.91e-01 82.3% 74.1%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.56 42.0 3.52e-01 82.3% 98.2%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.56 38.0 3.05e-01 71.0% 54.3%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 50.0 4.24e-01 98.4% 68.4%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 45.0 2.84e-01 100.0% 94.2%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 43.0 3.57e-01 90.3% 85.6%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.22e-01 83.9% 93.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.69e-01 74.2% 95.5%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.53 43.0 3.81e-01 96.8% 72.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.93e-01 85.5% 87.5%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.98e-01 85.5% 93.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.92e-01 85.5% 88.7%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 3.05e-01 77.4% 96.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.52 38.0 3.37e-01 79.0% 65.3%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.79e-01 91.9% 74.6%
4ifdE00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 40.0 2.72e-01 90.3% 61.4%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.88e-01 85.5% 88.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291683 4221.1.1.0 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.85 66.0 5.81e-01 83.9% 64.4%
4989783 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.75 46.0 2.70e-01 85.5% 8.6%
4973468 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 61.0 4.64e-01 90.3% 61.4%
3515407 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.73 61.0 4.40e-01 90.3% 53.0%
3601171 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.71 55.0 4.97e-01 83.9% 62.4%
3452325 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 54.0 3.78e-01 83.9% 32.5%
3283785 306.6.1.1 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › CT_C_D 0.70 53.0 4.73e-01 82.3% 100.0%
3603899 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.70 59.0 4.50e-01 90.3% 63.7%
4281419 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.69 58.0 4.42e-01 90.3% 62.3%
5064664 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 57.0 4.56e-01 90.3% 71.7%
4160544 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 55.0 4.22e-01 91.9% 86.7%
5025916 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 56.0 4.31e-01 93.5% 95.2%
4927614 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 53.0 4.41e-01 87.1% 54.5%
3263735 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 58.0 3.63e-01 98.4% 40.0%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.66 51.0 4.75e-01 85.5% 81.2%
4931472 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 54.0 3.88e-01 95.2% 70.0%
3235525 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 55.0 3.93e-01 98.4% 54.0%
4661346 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 55.0 4.12e-01 91.9% 57.2%
5004339 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 52.0 3.92e-01 91.9% 85.7%
4960839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.15e-01 80.6% 58.0%
3239831 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 55.0 4.28e-01 96.8% 69.3%
4248250 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.64 54.0 3.81e-01 91.9% 73.0%
5016556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 44.0 3.92e-01 74.2% 72.2%
5057301 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 53.0 3.49e-01 91.9% 37.3%
3915890 10.1.1.5 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin 0.63 46.0 3.81e-01 77.4% 49.1%
3212890 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 51.0 3.48e-01 98.4% 42.2%
5022797 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.61 45.0 3.07e-01 77.4% 43.7%
4322242 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.61 52.0 3.53e-01 96.8% 75.7%
3305914 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 48.0 4.02e-01 85.5% 84.8%
3212072 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.61 51.0 3.18e-01 96.8% 44.8%
5049007 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.60 48.0 3.28e-01 87.1% 76.3%
4015753 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 54.0 3.54e-01 100.0% 49.4%
3179155 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.60 53.0 3.47e-01 100.0% 51.7%
4528716 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.60 46.0 3.95e-01 85.5% 53.3%
3214007 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 43.0 3.46e-01 79.0% 52.0%
None 0.59 48.0 3.15e-01 90.3% 25.6%
3400053 206.1.1.98 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1, APH 0.59 47.0 3.25e-01 90.3% 30.0%
3578232 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.57 46.0 3.19e-01 91.9% 79.1%
3833385 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.57 42.0 3.26e-01 82.3% 53.3%
3841271 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.57 43.0 3.11e-01 87.1% 76.3%
4944335 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 47.0 4.04e-01 88.7% 94.6%
3826906 206.1.1.87 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, RIO1 0.56 48.0 3.18e-01 100.0% 67.6%
3579710 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.56 45.0 3.80e-01 88.7% 65.7%
4280539 109.21.1.8 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.56 48.0 2.70e-01 95.2% 35.0%
3932539 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.94e-01 91.9% 33.2%
3617987 4099.1.1.28 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29108 0.56 45.0 4.15e-01 95.2% 75.3%
3175455 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 48.0 3.01e-01 100.0% 57.5%
5048974 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.67e-01 88.7% 67.3%
3781064 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.54 40.0 3.88e-01 80.6% 74.3%
3719029 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.54 46.0 3.45e-01 98.4% 57.0%
3057485 71.1.1.10 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.54 40.0 3.14e-01 83.9% 95.5%
3218646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.71e-01 72.6% 93.8%
4386054 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.54 42.0 2.91e-01 95.2% 25.2%
3816744 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.53 48.0 2.97e-01 98.4% 31.9%
5048477 109.4.1.3618 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7669 0.51 42.0 3.01e-01 100.0% 54.5%