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KM879221.2__AIU44329.1__RG2014_075__00075

Bact-Vir

KM879221.2__AIU44329.1__RG2014_075__00075

Identity

Accession:
KM879221 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Dendoorenvirus› Delftia_phage_RG-2014

TaxID: 1563661

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-71
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.51 35.0 3.28e-01 76.9% 80.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600217 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.54 42.0 2.82e-01 92.3% 45.6%
D2 medium residues 89-180
PDB
Domain cluster: rep: KR052142.1__AKH49523.1__vB_PaeP_fi6_080__00080__D107-209
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dsgA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.59 43.0 4.14e-01 98.9% 67.9%
5tpmB00 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.58 45.0 3.92e-01 82.6% 63.8%
2eh3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 39.0 3.57e-01 71.7% 95.9%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.54 43.0 3.17e-01 88.0% 75.1%
1vbiA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.54 36.0 3.49e-01 70.7% 61.2%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 24.0 2.37e-01 73.9% 38.2%
1wwiA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.51 38.0 3.32e-01 81.5% 98.6%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 37.0 3.20e-01 78.3% 62.9%
3n3wA00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.50 35.0 3.06e-01 71.7% 70.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3594725 3712.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.58 34.0 3.19e-01 93.5% 45.2%
3881839 4044.1.1.12 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › RH_dom 0.53 38.0 3.78e-01 76.1% 93.7%
3784213 101.1.1.207 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF6581 0.52 38.0 3.78e-01 78.3% 87.0%
5003168 5069.1.3.132 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Yip1 0.51 43.0 3.39e-01 93.5% 88.8%
3202880 5076.2.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › EI24 0.50 36.0 2.76e-01 76.1% 70.4%