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KM879221.2__AQZ27136.1__RG2014_043__00043

Bact-Vir

KM879221.2__AQZ27136.1__RG2014_043__00043

Identity

Accession:
KM879221 ↗
Kingdom:
phage

Quality

61.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Dendoorenvirus› Delftia_phage_RG-2014

TaxID: 1563661

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-88
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 4.50e-01 79.4% 49.5%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 54.0 4.22e-01 84.1% 39.7%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.70 58.0 5.30e-01 95.2% 76.7%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 52.0 4.95e-01 88.9% 69.3%
2vlaA01 1.10.10.2080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 58.0 5.48e-01 100.0% 83.3%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.28e-01 93.7% 79.5%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.66 55.0 5.14e-01 95.2% 77.8%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.86e-01 88.9% 80.3%
1wfxA01 1.10.10.970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain 0.63 48.0 4.72e-01 85.7% 88.7%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.63 47.0 4.33e-01 82.5% 67.4%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.62 43.0 3.18e-01 71.4% 92.4%
2vk9A04 1.10.274.80 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › 0.61 45.0 3.87e-01 79.4% 53.8%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.60 48.0 4.82e-01 88.9% 95.2%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 48.0 3.88e-01 95.2% 43.6%
1hi8A02 1.10.490.60 Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain 0.60 44.0 3.50e-01 82.5% 86.8%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 48.0 4.67e-01 95.2% 86.5%
2zxyA00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.59 50.0 4.55e-01 96.8% 98.8%
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 48.0 4.32e-01 90.5% 100.0%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 46.0 4.55e-01 90.5% 83.8%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 48.0 3.89e-01 100.0% 91.5%
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 41.0 3.46e-01 81.0% 64.6%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 47.0 3.75e-01 100.0% 91.2%
3jz0A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.53 41.0 3.34e-01 87.3% 91.5%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 43.0 3.52e-01 92.1% 70.2%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.52 44.0 3.39e-01 95.2% 84.0%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.52 40.0 3.31e-01 87.3% 84.1%
4cs9C00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.51 35.0 2.65e-01 71.4% 57.6%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3858057 101.42.1.1 ↗ alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.76 61.0 5.77e-01 87.3% 76.0%
3409418 101.1.1.244 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.74 59.0 5.63e-01 96.8% 73.3%
3454767 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 5.93e-01 92.1% 92.7%
3908865 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.73 52.0 5.48e-01 82.5% 89.1%
3606798 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 5.59e-01 84.1% 94.5%
3311239 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.71 60.0 4.85e-01 96.8% 51.2%
3814136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.68e-01 92.1% 94.5%
3379716 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.70 60.0 4.81e-01 96.8% 50.4%
3575777 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.70 51.0 5.47e-01 84.1% 100.0%
4013698 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 52.0 5.17e-01 81.0% 80.0%
3369798 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.70 59.0 5.39e-01 96.8% 74.1%
3467577 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.69 59.0 4.84e-01 96.8% 52.5%
3594352 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 5.13e-01 90.5% 73.3%
3650038 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.69 58.0 4.63e-01 96.8% 46.7%
3211136 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 53.0 5.19e-01 85.7% 91.4%
3363421 101.1.2.730 ↗ alpha arrays › HTH › HTH › winged helix domain › Eaf7 0.69 56.0 5.61e-01 92.1% 95.4%
3664835 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.68 57.0 4.66e-01 96.8% 52.0%
4014657 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 53.0 5.52e-01 92.1% 100.0%
3618803 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 49.0 5.07e-01 84.1% 83.3%
3453546 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 5.34e-01 92.1% 84.6%
3975669 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.67 51.0 4.35e-01 82.5% 91.4%
3482846 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 52.0 5.35e-01 85.7% 91.7%
4520559 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.67 56.0 5.16e-01 95.2% 74.1%
5057164 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 4.44e-01 88.9% 53.0%
3817152 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.56e-01 92.1% 100.0%
4001420 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 52.0 5.05e-01 88.9% 77.1%
4969508 3697.1.1.1 ↗ alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx 0.66 52.0 4.83e-01 93.7% 68.8%
3509166 101.1.1.244 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_TIMELESS 0.66 51.0 5.02e-01 92.1% 80.0%
143247 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.65 54.0 5.05e-01 95.2% 76.8%
3185127 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.33e-01 96.8% 95.4%
4528028 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.65 52.0 3.72e-01 92.1% 30.5%
5074088 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.64 47.0 3.32e-01 90.5% 24.4%
4937450 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.64 51.0 3.69e-01 92.1% 30.2%
4050022 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.64 50.0 5.21e-01 93.7% 98.2%
3824846 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.63 47.0 4.59e-01 85.7% 74.3%
3199759 101.1.1.20 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.63 51.0 4.51e-01 90.5% 96.8%
3990120 162.1.1.1 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.62 47.0 4.03e-01 82.5% 97.1%
3224502 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.62 48.0 5.03e-01 85.7% 100.0%
4456736 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.62 51.0 3.83e-01 96.8% 54.9%
4048642 101.1.1.304 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.61 49.0 4.94e-01 96.8% 95.2%
4355585 101.1.1.304 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.61 48.0 4.92e-01 95.2% 98.3%
3952640 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 4.92e-01 92.1% 98.2%
3906253 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 44.0 3.66e-01 82.5% 60.8%
5016159 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.57 40.0 4.12e-01 76.2% 83.3%
4951392 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.23e-01 81.0% 81.3%
4062553 509.1.1.10 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 0.55 42.0 3.86e-01 88.9% 67.8%
4963200 601.7.1.34 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.51 40.0 3.49e-01 87.3% 61.0%
3612496 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 38.0 2.87e-01 85.7% 31.7%