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KM879463.1__AIZ01760.1__ArV1_073__00074

Bact-Vir

KM879463.1__AIZ01760.1__ArV1_073__00074

Identity

Accession:
KM879463 ↗
Kingdom:
phage

Quality

60.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klausavirus› Arthrobacter_phage_vB_ArtM-ArV1

TaxID: 1566993

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-72
PDB
D2 high residues 84-133
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 55.0 3.73e-01 78.0% 24.7%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.74 54.0 5.13e-01 78.0% 87.9%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 3.45e-01 76.0% 44.1%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.65 46.0 4.08e-01 78.0% 89.6%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.63 44.0 3.24e-01 76.0% 28.7%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.62 41.0 4.16e-01 76.0% 70.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 3.85e-01 74.0% 66.7%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 3.70e-01 74.0% 67.9%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.59 48.0 4.43e-01 96.0% 85.7%
4zpxA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 41.0 2.72e-01 78.0% 17.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.56 38.0 3.54e-01 72.0% 60.6%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 41.0 3.19e-01 90.0% 82.0%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.55 37.0 2.94e-01 74.0% 48.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.11e-01 74.0% 52.1%
3zoqC00 6.20.250.30 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.53 39.0 3.86e-01 80.0% 92.5%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 33.0 2.38e-01 98.0% 22.8%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.23e-01 76.0% 62.7%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 42.0 3.31e-01 94.0% 91.5%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.51 41.0 3.48e-01 94.0% 81.5%
3uyjA00 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.51 37.0 2.42e-01 78.0% 17.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010674 4076.3.1.11 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 0.77 55.0 5.37e-01 76.0% 78.2%
5063665 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.76 54.0 5.66e-01 74.0% 100.0%
5075901 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 54.0 5.28e-01 76.0% 89.1%
4941835 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.76 54.0 5.10e-01 76.0% 83.3%
4944185 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 54.0 4.89e-01 76.0% 73.8%
5042275 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 54.0 5.28e-01 78.0% 92.7%
4083057 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 52.0 5.24e-01 76.0% 92.0%
4154378 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.71 62.0 5.70e-01 98.0% 95.4%
3621402 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.67 48.0 4.56e-01 78.0% 95.0%
3060788 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.64 45.0 4.29e-01 76.0% 93.3%
3256148 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 42.0 3.78e-01 72.0% 81.3%
4934934 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.62 44.0 2.92e-01 74.0% 18.2%
1391581 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.60 43.0 3.55e-01 76.0% 53.8%
3492427 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.60 50.0 4.50e-01 98.0% 70.7%
4547274 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.60 40.0 3.29e-01 70.0% 94.0%
5008102 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.60 41.0 3.40e-01 76.0% 95.0%
5071733 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.59 45.0 3.73e-01 84.0% 85.6%
4976626 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.59 39.0 2.60e-01 70.0% 99.6%
4162390 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.58 40.0 2.58e-01 76.0% 28.2%
5071156 3714.1.1.1 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.57 39.0 2.67e-01 74.0% 99.5%
3917008 382.1.1.2 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.57 49.0 4.26e-01 100.0% 85.0%
4978507 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 39.0 2.53e-01 76.0% 14.5%
3797485 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 39.0 2.94e-01 74.0% 40.0%
3499101 3346.1.1.5 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.56 46.0 3.26e-01 100.0% 37.1%
3173132 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 39.0 3.01e-01 80.0% 86.4%
3340123 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.53 37.0 3.15e-01 76.0% 51.1%
3480655 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.53 36.0 2.82e-01 76.0% 56.2%
3889853 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.52 35.0 2.87e-01 76.0% 45.2%
3253067 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 35.0 2.93e-01 74.0% 79.0%
4507341 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.50 37.0 2.78e-01 100.0% 28.4%