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KM979354.1__AJA41628.1__DT57C_000108__00108

Bact-Vir

KM979354.1__AJA41628.1__DT57C_000108__00108

Identity

Accession:
KM979354 ↗
Kingdom:
phage

Quality

67.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 245-300
PDB
D2 medium residues 333-406
PDB
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4838977 840.1.1.1 a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RNA_pol_Rpb5_C 0.52 36.0 3.62e-01 79.7% 71.1%
4937466 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.50 33.0 3.37e-01 78.4% 70.0%
D3 medium residues 586-680_776-793
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xgfA01 3.90.1340.10 Alpha Beta › Alpha-Beta Complex › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3 › Phage tail collar domain 0.84 42.0 5.91e-01 89.4% 100.0%
1ocyA01 3.90.1340.10 Alpha Beta › Alpha-Beta Complex › heat- and protease-stable fragment of the bacteriophage t4 short fibre, domain 3 › Phage tail collar domain 0.79 52.0 6.26e-01 93.8% 98.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1839976 877.1.1.3 a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar,S_tail_recep_bd 0.64 58.0 4.67e-01 94.7% 99.5%
141225 877.1.1.1 a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Phage_fiber,Collar 0.57 49.0 3.85e-01 89.4% 100.0%
3981712 877.1.1.2 a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar 0.56 45.0 4.10e-01 84.1% 100.0%
D4 medium residues 794-877
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6p3lA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 46.0 4.11e-01 71.4% 46.1%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 49.0 4.23e-01 70.2% 52.8%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 50.0 4.23e-01 72.6% 46.9%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 48.0 4.15e-01 70.2% 46.8%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.71 53.0 3.59e-01 78.6% 70.3%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 45.0 3.96e-01 73.8% 47.5%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 47.0 4.08e-01 72.6% 49.2%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.67 50.0 3.76e-01 78.6% 60.8%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 48.0 4.09e-01 76.2% 83.3%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 49.0 3.27e-01 79.8% 72.3%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 45.0 3.13e-01 73.8% 39.1%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 51.0 3.36e-01 86.9% 93.7%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 48.0 3.62e-01 82.1% 47.2%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.67e-01 92.9% 79.6%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.71e-01 78.6% 73.2%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.59 48.0 3.55e-01 88.1% 40.6%
3fcyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 45.0 3.08e-01 83.3% 84.9%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 49.0 3.57e-01 91.7% 80.3%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.58 47.0 3.35e-01 89.3% 91.8%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 3.00e-01 84.5% 84.0%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 46.0 3.75e-01 94.0% 62.1%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 45.0 3.79e-01 88.1% 90.8%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 41.0 3.41e-01 81.0% 85.4%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 40.0 3.65e-01 79.8% 93.0%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.62e-01 89.3% 91.4%
1zkiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.78e-01 86.9% 94.4%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.53 44.0 3.73e-01 89.3% 72.3%
3e29B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 43.0 3.75e-01 89.3% 91.8%
1sbkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 42.0 3.63e-01 86.9% 89.8%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.17e-01 94.0% 74.7%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 3.00e-01 92.9% 40.1%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 41.0 3.15e-01 88.1% 61.1%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.43e-01 92.9% 57.2%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 37.0 3.83e-01 79.8% 100.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3944439 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.86 77.0 6.21e-01 95.2% 56.0%
5038381 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.73 50.0 4.33e-01 70.2% 47.2%
6388 243.1.1.22 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Lumazine_bd_2 0.71 48.0 4.15e-01 70.2% 46.8%
3889571 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.69 48.0 4.23e-01 72.6% 53.7%
164223 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.66 48.0 4.09e-01 76.2% 83.3%
3213695 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.65 44.0 3.79e-01 72.6% 44.6%
3228089 5087.1.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.65 55.0 4.48e-01 92.9% 56.1%
3276957 3692.1.1.1 a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall 0.63 47.0 3.96e-01 81.0% 60.0%
4088478 222.1.1.15 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C 0.63 53.0 4.31e-01 91.7% 83.2%
154696 9.1.1.2 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Nitrophorin 0.63 48.0 3.62e-01 81.0% 46.2%
3360680 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.63 48.0 3.14e-01 82.1% 92.9%
3601683 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.62 53.0 3.56e-01 91.7% 30.6%
3616309 5.1.5.236 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st 0.62 48.0 3.10e-01 82.1% 96.7%
4466226 5087.1.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.60 53.0 4.94e-01 96.4% 95.2%
3788193 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 45.0 3.72e-01 81.0% 52.9%
3193851 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.59 46.0 2.91e-01 84.5% 22.6%
3238631 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.59 37.0 2.71e-01 78.6% 20.8%
3270919 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.58 49.0 4.35e-01 89.3% 85.2%
3783000 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 40.0 3.92e-01 72.6% 64.2%
5062952 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.57 42.0 3.80e-01 78.6% 93.9%
4024178 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 49.0 3.25e-01 100.0% 70.4%
3933425 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 41.0 3.70e-01 76.2% 62.6%
4093456 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.56 46.0 3.62e-01 92.9% 76.8%
None 0.55 45.0 3.49e-01 90.5% 41.5%
3652840 708.1.1.9 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.55 37.0 3.72e-01 75.0% 68.2%
5074121 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.55 45.0 3.76e-01 89.3% 85.5%
3643256 708.1.1.9 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.54 39.0 3.44e-01 76.2% 82.4%
5011817 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.54 43.0 3.75e-01 88.1% 93.3%
4623775 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.54 43.0 3.65e-01 86.9% 87.9%
5046843 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.54 43.0 3.67e-01 88.1% 89.2%
5038417 222.1.1.11 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF4442 0.53 43.0 3.64e-01 86.9% 86.4%
4615602 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.53 43.0 3.72e-01 88.1% 91.7%
3232806 216.1.1.26 a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.53 41.0 3.47e-01 84.5% 71.3%
1250391 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.53 44.0 3.67e-01 89.3% 89.4%
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.53 42.0 3.79e-01 88.1% 65.0%
3391128 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 46.0 2.97e-01 100.0% 53.2%
3760326 3291.1.1.50 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FmiP_Thoc5 0.53 42.0 3.40e-01 89.3% 65.7%
4629131 9.29.1.1 beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK 0.53 41.0 3.66e-01 85.7% 77.2%
3342641 708.1.1.9 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › CG-1 0.53 39.0 3.27e-01 77.4% 91.4%
5052702 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.53 41.0 3.63e-01 86.9% 91.5%
4580261 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.52 44.0 3.72e-01 91.7% 85.0%
4978501 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.52 42.0 3.55e-01 89.3% 50.3%
3966128 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.52 43.0 3.74e-01 90.5% 96.1%
3286575 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.52 42.0 3.68e-01 89.3% 95.3%
3916012 192.29.1.276 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › FmiP_Thoc5 0.52 42.0 3.34e-01 91.7% 76.2%
5040789 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.51 42.0 3.68e-01 91.7% 93.8%
3711360 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.95e-01 91.7% 94.0%
D5 medium residues 878-947
PDB
D6 medium residues 970-1075
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 27.1 5.70e-06 43.4% 72.4%