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KM983329.1__AJA42682.1__phiCT9441A_70__00069

Bact-Vir

KM983329.1__AJA42682.1__phiCT9441A_70__00069

Identity

Accession:
KM983329 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCT9441A

TaxID: 1567014

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-130
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 42.0 5.00e-01 74.0% 100.0%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 41.0 4.71e-01 72.7% 97.9%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 48.0 5.02e-01 93.5% 84.5%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 47.0 3.15e-01 76.6% 87.1%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.61 56.0 4.67e-01 100.0% 84.6%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 37.0 4.23e-01 71.4% 100.0%
1jxhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 45.0 3.19e-01 85.7% 99.6%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.56 46.0 4.22e-01 92.2% 92.3%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 42.0 4.22e-01 93.5% 82.1%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 4.10e-01 93.5% 93.0%
5iduA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.55 45.0 4.03e-01 97.4% 75.0%
1h1oA01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 38.0 3.91e-01 100.0% 77.3%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.98e-01 84.4% 93.3%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.54 34.0 3.17e-01 80.5% 47.2%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.53 38.0 3.55e-01 77.9% 79.2%
6rv2A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 37.0 2.66e-01 77.9% 24.8%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478184 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.69 48.0 4.44e-01 87.0% 56.0%
3180777 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.69 50.0 5.23e-01 77.9% 91.4%
4940179 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.67 59.0 4.70e-01 100.0% 58.7%
3947132 101.1.1.109 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF2543 0.67 47.0 4.84e-01 84.4% 77.3%
3593317 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 4.82e-01 83.1% 80.0%
4995680 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.67 49.0 5.36e-01 79.2% 100.0%
3234731 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.66 49.0 5.31e-01 80.5% 95.4%
5067843 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.65 42.0 4.78e-01 74.0% 100.0%
3436562 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 55.0 5.59e-01 98.7% 96.0%
3922168 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.64 47.0 4.93e-01 90.9% 85.7%
4559316 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.64 48.0 4.98e-01 79.2% 90.0%
3238440 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.64 50.0 5.32e-01 90.9% 100.0%
4586835 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.63 45.0 4.80e-01 83.1% 90.8%
4213222 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.62 44.0 4.69e-01 83.1% 92.2%
3738345 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.62 47.0 4.79e-01 89.6% 84.0%
3446951 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.61 50.0 4.78e-01 89.6% 78.9%
4683153 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.61 44.0 4.12e-01 84.4% 60.0%
4957698 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 47.0 4.05e-01 85.7% 62.0%
5029951 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 41.0 4.35e-01 80.5% 83.1%
4000709 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.59 47.0 4.94e-01 92.2% 95.7%
2325180 181.1.1.1 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.59 52.0 4.72e-01 98.7% 87.5%
3629401 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.59 48.0 5.03e-01 93.5% 100.0%
3231816 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 39.0 4.24e-01 77.9% 90.0%
3993206 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.57 47.0 4.92e-01 93.5% 100.0%
4605045 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 43.0 3.81e-01 80.5% 83.5%
3554511 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.57 42.0 4.24e-01 80.5% 92.5%
5026703 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.57 43.0 2.81e-01 88.3% 17.5%
1879330 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.54 38.0 3.69e-01 76.6% 100.0%
3404571 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.54 43.0 4.27e-01 89.6% 93.8%
3816829 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.52 39.0 3.14e-01 81.8% 58.7%
3505603 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 4.22e-01 98.7% 92.5%
3715741 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.51 39.0 2.95e-01 85.7% 36.2%
5054741 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 42.0 3.81e-01 93.5% 98.2%
3949230 5069.1.1.28 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DmsC 0.51 40.0 3.49e-01 94.8% 93.6%
3183917 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.50 44.0 2.98e-01 97.4% 93.9%
D2 high residues 164-256
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 42.0 4.70e-01 71.0% 100.0%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.57 42.0 3.77e-01 81.7% 55.0%
6pw7A01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.57 39.0 4.23e-01 91.4% 88.0%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.57 39.0 3.86e-01 72.0% 98.0%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 43.0 4.54e-01 92.5% 93.9%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.56 33.0 3.59e-01 78.5% 73.2%
1z6mA02 1.10.1200.90 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › DsbA-like domain 0.55 29.0 3.39e-01 95.7% 73.8%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.54 33.0 3.76e-01 98.9% 84.6%
1c48A00 2.40.50.70 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 4.24e-01 100.0% 100.0%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.52 42.0 2.83e-01 91.4% 78.0%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 37.0 3.73e-01 78.5% 90.3%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 35.0 2.92e-01 74.2% 98.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2708389 101.1.1.10 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ARID 0.71 44.0 4.07e-01 72.0% 49.2%
3685074 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.62 40.0 4.66e-01 72.0% 100.0%
4468962 101.1.1.46 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_2 0.62 39.0 4.52e-01 73.1% 90.8%
3930942 102.1.1.2 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC 0.61 37.0 3.62e-01 74.2% 56.0%
3703587 108.1.1.101 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.60 43.0 4.61e-01 75.3% 91.3%
3480389 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 39.0 4.13e-01 75.3% 76.2%
3934403 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.59 51.0 3.86e-01 98.9% 48.5%
3258497 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 41.0 4.54e-01 92.5% 98.6%
3598435 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.57 42.0 4.53e-01 89.2% 91.3%
4280641 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.56 40.0 3.39e-01 76.3% 49.7%
3824559 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.53 40.0 3.70e-01 82.8% 90.4%
4283426 101.8.1.2 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.52 37.0 3.15e-01 76.3% 53.3%
3725615 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 31.0 3.35e-01 77.4% 70.0%
3348250 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 3.62e-01 82.8% 92.8%
3966658 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.52 45.0 3.49e-01 100.0% 73.6%
3456443 2003.1.5.30 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 0.51 40.0 2.84e-01 86.0% 74.8%