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KP007360.1__AIZ02310.1__VR20_252__00252

Bact-Vir

KP007360.1__AIZ02310.1__VR20_252__00252

Identity

Accession:
KP007360 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Gaprivervirus› Escherichia_phage_vB_EcoM_VR20

TaxID: 1567027

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-49
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03197.20 best FRD2 53.8 3.30e-14 100.0% 46.4%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 4.87e-01 97.8% 70.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 4.50e-01 100.0% 60.0%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.67 52.0 3.20e-01 97.8% 13.8%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 47.0 4.12e-01 97.8% 48.6%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.65 52.0 3.16e-01 100.0% 13.7%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 52.0 3.61e-01 100.0% 27.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 3.91e-01 97.8% 46.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 45.0 4.08e-01 100.0% 51.4%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 47.0 4.25e-01 100.0% 56.7%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 43.0 2.92e-01 95.6% 17.5%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 45.0 4.18e-01 100.0% 61.3%
3bjeA01 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.58 40.0 2.47e-01 75.6% 91.0%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 47.0 3.95e-01 97.8% 79.0%
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.56 39.0 3.89e-01 86.7% 68.8%
4crsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 44.0 3.27e-01 100.0% 88.1%
8ep4C01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 2.70e-01 91.1% 73.9%
6igbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.67e-01 100.0% 12.1%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 37.0 3.33e-01 95.6% 47.3%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.52 40.0 3.42e-01 88.9% 92.5%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.20e-01 97.8% 44.4%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.52 41.0 3.46e-01 91.1% 50.6%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.52 39.0 3.63e-01 86.7% 73.8%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 44.0 3.46e-01 100.0% 57.6%
5a0tB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 34.0 2.21e-01 73.3% 44.7%
3zq4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 2.61e-01 100.0% 76.0%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.50 41.0 3.31e-01 95.6% 72.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4376548 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.70 55.0 3.35e-01 100.0% 13.6%
3569280 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.68 52.0 3.14e-01 95.6% 12.6%
3907514 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.67 53.0 3.26e-01 97.8% 15.1%
3593567 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.66 52.0 3.10e-01 95.6% 11.4%
3878207 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.65 51.0 3.14e-01 97.8% 13.7%
4003000 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.65 49.0 3.32e-01 95.6% 21.2%
3525879 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.65 52.0 3.16e-01 100.0% 13.5%
3887780 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.65 52.0 3.11e-01 100.0% 11.7%
3852566 5.1.3.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Beta-prop_ATRN-LZTR1 0.63 52.0 3.16e-01 97.8% 13.8%
3641024 5.1.3.137 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.63 53.0 3.08e-01 95.6% 11.4%
3583836 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.63 48.0 2.91e-01 97.8% 11.9%
3821920 4.1.1.283 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.62 42.0 4.04e-01 97.8% 60.0%
None — 0.62 48.0 2.96e-01 95.6% 13.8%
3921929 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.61 50.0 3.08e-01 97.8% 14.4%
3903704 5.1.3.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.61 49.0 2.98e-01 95.6% 12.7%
4385340 5.1.3.160 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.59 50.0 3.09e-01 100.0% 17.6%
5012319 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.57 40.0 3.51e-01 100.0% 44.7%
3884178 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.50 42.0 3.63e-01 100.0% 69.3%