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KP027015.1__AIY32256.1__LfeSau_07__00007

Bact-Vir

KP027015.1__AIY32256.1__LfeSau_07__00007

Identity

Accession:
KP027015 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_LfeSau

TaxID: 1567453

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-161
PDB
Domain cluster: rep: MK448924.1__QBX27354.1__Javan384_0019__00046__D41-152
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14265.12 best DUF4355 47.2 3.40e-12 99.2% 87.1%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.77 36.0 4.08e-01 77.5% 57.3%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.76 35.0 3.98e-01 77.5% 57.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.73 34.0 3.93e-01 77.5% 59.6%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 35.0 4.46e-01 83.7% 80.0%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.71 33.0 2.88e-01 77.5% 29.0%
2wzkA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.66 35.0 3.79e-01 71.3% 59.1%
3m03B00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 32.0 3.62e-01 76.0% 62.1%
2hydA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.64 50.0 3.73e-01 82.9% 63.2%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.60 39.0 4.30e-01 88.4% 84.0%
7metA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.59 48.0 3.59e-01 85.3% 99.7%
4jioA01 1.20.120.560 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain 0.59 40.0 3.78e-01 93.8% 55.9%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 42.0 3.96e-01 97.7% 61.6%
3wmeA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.57 48.0 3.64e-01 91.5% 72.7%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.57 41.0 3.76e-01 73.6% 100.0%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 29.0 2.97e-01 83.7% 48.0%
7zo9A01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.55 46.0 3.54e-01 91.5% 72.8%
3a98A02 1.20.1270.350 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain 0.55 28.0 3.37e-01 83.7% 71.3%
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.53 42.0 3.61e-01 82.2% 96.9%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 45.0 3.40e-01 93.8% 99.7%
3ofnY00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.52 36.0 3.82e-01 83.7% 80.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839022 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.75 66.0 5.63e-01 94.6% 93.7%
3606757 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.73 46.0 4.55e-01 70.5% 59.3%
4667148 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.70 54.0 4.49e-01 80.6% 50.5%
3842813 4177.1.1.140 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF4456 0.64 51.0 4.48e-01 84.5% 79.5%
4080313 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.63 48.0 4.71e-01 79.8% 82.9%
3263742 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.62 46.0 3.59e-01 78.3% 49.3%
4084556 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.61 46.0 4.82e-01 80.6% 89.2%
4875386 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.60 50.0 3.66e-01 93.0% 60.2%
4888543 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.59 44.0 3.20e-01 100.0% 27.1%
4234516 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.59 51.0 3.82e-01 96.9% 76.2%
3999727 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.58 49.0 3.56e-01 94.6% 59.0%
3505596 1075.4.1.9 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane 0.57 44.0 3.01e-01 79.1% 32.1%
3373543 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.57 48.0 3.01e-01 91.5% 43.5%
3799 603.6.1.1 ↗ alpha bundles › STAT-like › MukF C-terminal domain-like › MukF C-terminal domain-like › MukF_M 0.57 41.0 3.76e-01 73.6% 100.0%
3080489 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.56 50.0 3.77e-01 98.4% 73.0%
3547405 604.1.1.24 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4456 0.56 43.0 4.28e-01 81.4% 81.5%
3810023 1075.4.1.9 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane 0.55 49.0 2.97e-01 98.4% 35.9%
5070735 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 36.0 3.28e-01 88.4% 48.6%
4032081 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.52 46.0 3.56e-01 100.0% 74.0%