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KP027015.1__AIY32282.1__LfeSau_33__00033
Bact-VirKP027015.1__AIY32282.1__LfeSau_33__00033
Identity
- Accession:
- KP027015 ↗
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.87 | 63.0 | 6.32e-01 | 78.8% | 76.9% |
| 1gp8A00 | 4.10.810.10 | Few Secondary Structures › Irregular › Virus Scaffolding Protein; Chain A › Virus Scaffolding Protein; Chain A | 0.85 | 58.0 | 6.41e-01 | 75.0% | 92.5% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.82 | 62.0 | 6.50e-01 | 98.1% | 91.5% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.80 | 65.0 | 5.45e-01 | 88.5% | 53.5% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.80 | 58.0 | 5.83e-01 | 76.9% | 82.7% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.80 | 59.0 | 5.49e-01 | 78.8% | 82.8% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.79 | 63.0 | 6.66e-01 | 86.5% | 97.8% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.79 | 61.0 | 6.12e-01 | 86.5% | 83.0% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.79 | 65.0 | 6.63e-01 | 92.3% | 94.1% |
| 6axfA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.78 | 63.0 | 4.82e-01 | 88.5% | 67.5% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.77 | 62.0 | 5.46e-01 | 86.5% | 64.0% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.76 | 66.0 | 5.12e-01 | 98.1% | 76.7% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.76 | 61.0 | 5.25e-01 | 88.5% | 57.3% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 59.0 | 4.28e-01 | 86.5% | 33.3% |
| 4bx9C00 | 1.10.150.780 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region | 0.74 | 66.0 | 5.40e-01 | 100.0% | 71.6% |
| 6adqG01 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.74 | 63.0 | 4.28e-01 | 94.2% | 29.2% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.70 | 53.0 | 4.14e-01 | 86.5% | 41.3% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.69 | 58.0 | 4.43e-01 | 94.2% | 41.9% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.68 | 59.0 | 4.13e-01 | 100.0% | 40.0% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.66 | 57.0 | 4.50e-01 | 100.0% | 47.0% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.61 | 53.0 | 3.50e-01 | 100.0% | 48.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4640528 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.91 | 65.0 | 7.20e-01 | 76.9% | 97.5% |
| 3904785 | 4156.1.1.1 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 | 0.87 | 63.0 | 5.16e-01 | 76.9% | 44.4% |
| 4088690 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.86 | 68.0 | 5.81e-01 | 84.6% | 55.0% |
| 4289855 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.85 | 65.0 | 6.04e-01 | 84.6% | 66.2% |
| 5025189 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.82 | 67.0 | 6.62e-01 | 88.5% | 83.6% |
| 4513708 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.82 | 66.0 | 5.92e-01 | 86.5% | 65.7% |
| 3240245 | 192.17.1.1 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn | 0.81 | 64.0 | 6.58e-01 | 86.5% | 90.0% |
| None | — | 0.80 | 64.0 | 3.65e-01 | 86.5% | 8.7% | |
| 5060022 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.79 | 62.0 | 5.51e-01 | 88.5% | 60.0% |
| 4877881 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.78 | 56.0 | 6.04e-01 | 76.9% | 100.0% |
| 3230775 | 192.1.1.25 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VPS18_RING_C | 0.78 | 63.0 | 4.93e-01 | 88.5% | 45.5% |
| 4930198 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.78 | 62.0 | 5.92e-01 | 86.5% | 75.0% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.77 | 61.0 | 5.14e-01 | 86.5% | 56.5% |
| 3360144 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.75 | 60.0 | 5.44e-01 | 88.5% | 65.7% |
| 5073502 | 159.1.1.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 | 0.74 | 58.0 | 4.87e-01 | 86.5% | 52.2% |