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KP027201.1__AJA43338.1__PBI_SBASH_37__00037
Bact-VirKP027201.1__AJA43338.1__PBI_SBASH_37__00037
Identity
- Accession:
- KP027201 ↗
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Taxonomy
TaxID: 1567475
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-49
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.91 | 80.0 | 7.90e-01 | 97.7% | 100.0% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.91 | 81.0 | 6.03e-01 | 100.0% | 41.9% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.86 | 71.0 | 6.92e-01 | 100.0% | 83.3% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.85 | 70.0 | 4.84e-01 | 90.9% | 33.3% |
| 2q1kA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.84 | 77.0 | 7.23e-01 | 100.0% | 84.6% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.83 | 69.0 | 4.88e-01 | 93.2% | 32.1% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.83 | 72.0 | 5.04e-01 | 97.7% | 62.0% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.81 | 72.0 | 5.17e-01 | 100.0% | 36.3% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.81 | 68.0 | 4.99e-01 | 100.0% | 37.6% |
| 3hl1A02 | 6.10.140.1530 | Special › Helix non-globular › Helix Hairpins › | 0.81 | 67.0 | 5.95e-01 | 95.5% | 76.9% |
| 2d8dB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.81 | 57.0 | 4.55e-01 | 75.0% | 74.7% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 71.0 | 6.64e-01 | 100.0% | 87.0% |
| 4ofzA01 | 1.20.58.1800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 69.0 | 5.13e-01 | 100.0% | 42.5% |
| 1ecmB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.79 | 54.0 | 4.18e-01 | 72.7% | 67.4% |
| 1z5zA02 | 1.20.120.850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain | 0.79 | 62.0 | 5.17e-01 | 86.4% | 59.2% |
| 4abxC01 | 6.10.140.1080 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 64.0 | 5.45e-01 | 95.5% | 100.0% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.77 | 65.0 | 6.44e-01 | 97.7% | 95.7% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.77 | 63.0 | 4.81e-01 | 100.0% | 39.7% |
| 4d3dB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.76 | 63.0 | 4.56e-01 | 95.5% | 34.9% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.76 | 58.0 | 5.71e-01 | 84.1% | 85.1% |
| 1bdgA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.76 | 52.0 | 3.45e-01 | 72.7% | 46.3% |
| 5mmjb02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 49.0 | 4.64e-01 | 70.5% | 73.1% |
| 1t6cA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.72 | 55.0 | 3.90e-01 | 81.8% | 37.6% |
| 2vy1A00 | 1.10.4180.10 | Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY | 0.71 | 63.0 | 4.20e-01 | 100.0% | 41.1% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 55.0 | 5.11e-01 | 100.0% | 73.8% |
| 2xr1A03 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.70 | 57.0 | 3.51e-01 | 93.2% | 15.5% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.69 | 61.0 | 4.98e-01 | 97.7% | 73.4% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.69 | 48.0 | 4.32e-01 | 70.5% | 58.3% |
| 5lb3B02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 59.0 | 3.76e-01 | 100.0% | 35.1% |
| 4dqnA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.64 | 45.0 | 3.06e-01 | 75.0% | 19.6% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.63 | 46.0 | 2.79e-01 | 79.5% | 28.6% |
| 3keoA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 3.82e-01 | 81.8% | 69.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3204414 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.97 | 91.0 | 5.14e-01 | 100.0% | 12.3% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.95 | 88.0 | 6.89e-01 | 100.0% | 54.1% |
| 4337254 | 3755.4.1.79 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › eIF3h_C | 0.94 | 87.0 | 6.20e-01 | 100.0% | 73.0% |
| 3557114 | 604.1.1.66 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL | 0.92 | 84.0 | 6.12e-01 | 100.0% | 40.0% |
| 5044642 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.91 | 82.0 | 4.97e-01 | 100.0% | 17.6% |
| 3892492 | 604.1.1.66 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL | 0.91 | 83.0 | 6.02e-01 | 100.0% | 40.0% |
| 1268387 | 604.1.1.6 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_4 | 0.90 | 81.0 | 5.96e-01 | 100.0% | 40.4% |
| 3855780 | 604.1.1.66 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL | 0.90 | 81.0 | 5.83e-01 | 100.0% | 38.3% |
| 4878100 | 616.1.1.2 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS | 0.85 | 67.0 | 6.84e-01 | 86.4% | 100.0% |
| 4281883 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.85 | 63.0 | 4.30e-01 | 77.3% | 25.9% |
| 4209288 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.82 | 68.0 | 5.11e-01 | 97.7% | 39.1% |
| 3600071 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 69.0 | 6.08e-01 | 97.7% | 72.3% |
| 3729389 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.80 | 63.0 | 4.18e-01 | 84.1% | 24.5% |
| 4684 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.79 | 68.0 | 6.02e-01 | 100.0% | 86.2% |
| 3714755 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.78 | 67.0 | 4.14e-01 | 97.7% | 18.4% |
| 3258193 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.78 | 62.0 | 5.27e-01 | 88.6% | 54.3% |
| 5026124 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.76 | 53.0 | 4.69e-01 | 75.0% | 80.0% |
| 4477957 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.76 | 52.0 | 3.66e-01 | 86.4% | 23.7% |
| 3398024 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 64.0 | 5.09e-01 | 100.0% | 46.3% |
| 3540167 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.75 | 52.0 | 3.64e-01 | 88.6% | 23.7% |
| 3510767 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.75 | 64.0 | 3.54e-01 | 100.0% | 8.1% |
| 4489833 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.75 | 54.0 | 4.62e-01 | 77.3% | 50.0% |
| 4682789 | 2498.4.1.1 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 | 0.73 | 54.0 | 3.74e-01 | 79.5% | 25.5% |
| 4246249 | 3748.1.1.3 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C | 0.71 | 58.0 | 4.03e-01 | 100.0% | 28.6% |
| 3975557 | 3782.1.1.0 ↗ | a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related | 0.69 | 55.0 | 4.84e-01 | 93.2% | 58.5% |
| 5030594 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.69 | 58.0 | 3.99e-01 | 93.2% | 31.4% |
| None | — | 0.65 | 47.0 | 3.59e-01 | 75.0% | 89.0% | |
| 3662125 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 51.0 | 2.93e-01 | 100.0% | 41.4% |
| 3224502 | 101.1.1.75 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 | 0.57 | 43.0 | 4.06e-01 | 88.6% | 67.3% |
| 5012326 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 46.0 | 3.11e-01 | 100.0% | 23.0% |