←Back to structures

KP037007.1__AIX13108.1__NW77_100__00100

Bact-Vir

KP037007.1__AIX13108.1__NW77_100__00100

Identity

Accession:
KP037007 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Nezavisimistyvirus› Erwinia_phage_phiEa2809

TaxID: 1564096

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-103
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00649__D23-135
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.83 68.0 5.50e-01 100.0% 48.8%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.82 70.0 5.62e-01 100.0% 50.0%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.75 70.0 5.70e-01 100.0% 60.3%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 50.0 4.54e-01 98.9% 60.5%
5f2kB02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 40.0 3.06e-01 93.3% 27.1%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 45.0 4.51e-01 98.9% 73.4%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.61 37.0 3.77e-01 95.6% 59.6%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 38.0 3.71e-01 91.1% 56.7%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.61 39.0 3.97e-01 95.6% 66.7%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 41.0 3.75e-01 95.6% 54.3%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 43.0 4.14e-01 100.0% 66.0%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 36.0 3.70e-01 96.7% 61.8%
5lf5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 3.74e-01 97.8% 62.4%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.58 42.0 4.04e-01 100.0% 65.4%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.57 38.0 3.07e-01 94.4% 35.2%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 36.0 3.71e-01 93.3% 66.3%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 4.11e-01 100.0% 77.3%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 30.0 2.62e-01 98.9% 33.6%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.53e-01 96.7% 65.0%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.56 37.0 3.76e-01 94.4% 68.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 49.0 4.20e-01 100.0% 65.3%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 34.0 3.50e-01 97.8% 64.4%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 29.0 2.98e-01 98.9% 54.0%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 34.0 3.31e-01 97.8% 59.8%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 34.0 3.49e-01 100.0% 66.7%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.47e-01 96.7% 64.4%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.52e-01 95.6% 64.8%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.36e-01 95.6% 59.8%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.84 69.0 6.03e-01 100.0% 61.4%
3977123 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.83 70.0 5.65e-01 100.0% 50.0%
136185 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.82 70.0 5.62e-01 100.0% 50.0%
5003885 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.80 70.0 5.84e-01 100.0% 57.2%
2101663 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.79 72.0 5.77e-01 96.7% 58.3%
3264744 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.79 67.0 5.25e-01 100.0% 46.3%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.78 68.0 5.78e-01 100.0% 59.2%
3265120 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.78 66.0 5.21e-01 100.0% 46.3%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.77 68.0 5.67e-01 100.0% 57.0%
4982153 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 68.0 4.74e-01 100.0% 31.5%
4995819 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 70.0 5.84e-01 100.0% 62.7%
3581358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.76 69.0 5.72e-01 98.9% 60.6%
4952629 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 55.0 5.33e-01 94.4% 69.0%
80 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.75 70.0 5.65e-01 100.0% 58.7%
4952430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 55.0 5.17e-01 94.4% 63.6%
2471637 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.74 64.0 5.36e-01 100.0% 56.4%
4140243 1.1.5.82 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.73 62.0 5.69e-01 98.9% 71.3%
3943316 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 65.0 5.33e-01 100.0% 62.5%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.71 58.0 4.11e-01 100.0% 29.6%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.69 60.0 4.85e-01 100.0% 51.2%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.69 62.0 5.18e-01 100.0% 58.2%
5004308 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 61.0 5.09e-01 100.0% 60.6%
3096576 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 61.0 4.96e-01 98.9% 56.0%
3537229 310.3.1.21 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HNOB 0.66 43.0 4.14e-01 94.4% 57.1%
3585212 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.66 49.0 3.65e-01 96.7% 32.1%
3210886 304.8.1.78 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7637 0.64 49.0 4.64e-01 98.9% 68.6%
3964955 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 57.0 4.73e-01 100.0% 62.5%
3220212 304.12.1.11 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › DUF7637 0.63 48.0 4.45e-01 98.9% 64.5%
3513366 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 57.0 4.58e-01 100.0% 52.0%
5024024 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.62 42.0 4.15e-01 98.9% 66.0%
3223328 304.8.1.78 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7637 0.62 48.0 4.55e-01 98.9% 69.5%
3611921 7501.1.1.1 ↗ a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.61 40.0 2.89e-01 93.3% 25.7%
3591908 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 4.14e-01 97.8% 47.8%
4628567 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.60 42.0 3.91e-01 100.0% 57.4%
4585125 304.12.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.58 43.0 4.17e-01 100.0% 71.0%
3892794 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 35.0 3.41e-01 96.7% 55.0%
4938021 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.55 35.0 4.08e-01 91.1% 96.7%
4342941 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.53 33.0 3.40e-01 97.8% 64.7%
3942433 256.1.1.4 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF4177 0.52 36.0 4.16e-01 93.3% 100.0%