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KP054477.1__AIZ94732.1__LfeInf_106__00106

Bact-Vir

KP054477.1__AIZ94732.1__LfeInf_106__00106

Identity

Accession:
KP054477 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Hopescreekvirus› Lactobacillus_phage_LfeInf

TaxID: 1567484

Cluster

View cluster (42 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-47
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 47.0 4.35e-01 100.0% 61.4%
4dooA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.53 44.0 3.12e-01 100.0% 65.1%
3r2gA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 38.0 2.41e-01 92.9% 71.5%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.51 37.0 3.83e-01 95.2% 94.4%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 2.53e-01 100.0% 19.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3499437 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 51.0 3.23e-01 97.6% 23.1%
3479549 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 50.0 3.55e-01 97.6% 39.3%
3935748 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.62 52.0 3.43e-01 100.0% 85.6%
D2 high residues 51-113
PDB
Domain cluster: rep: MK448710.1__QBX16110.1__Javan233_0030__00030__D34-99
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09643.16 best YopX 25.5 1.60e-05 93.7% 50.8%
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.79 71.0 6.74e-01 95.2% 83.6%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.67 46.0 3.78e-01 73.0% 99.2%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.63 53.0 4.08e-01 95.2% 84.4%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 53.0 5.03e-01 95.2% 98.6%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 47.0 4.11e-01 85.7% 58.4%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.61 50.0 4.36e-01 92.1% 93.0%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 49.0 4.38e-01 90.5% 83.1%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 49.0 4.12e-01 92.1% 100.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.09e-01 98.4% 85.5%
2sfaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 39.0 3.46e-01 71.4% 82.4%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.61e-01 74.6% 78.7%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 40.0 3.16e-01 74.6% 74.6%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 46.0 4.44e-01 95.2% 90.5%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 44.0 3.94e-01 88.9% 76.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 45.0 4.32e-01 92.1% 98.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.30e-01 88.9% 41.6%
2vpzA05 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 45.0 3.40e-01 96.8% 59.1%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.59e-01 96.8% 84.9%
2qtlA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 42.0 3.58e-01 90.5% 76.6%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 43.0 3.67e-01 92.1% 78.4%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.52 43.0 4.13e-01 98.4% 96.1%
3jcuB02 3.10.680.10 Alpha Beta › Roll › Photosystem II CP47 reaction center protein › Photosystem II CP47 reaction center protein 0.51 44.0 3.29e-01 100.0% 66.5%
3l48A01 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.51 37.0 3.52e-01 93.7% 65.8%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 37.0 2.97e-01 81.0% 100.0%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 36.0 3.77e-01 79.4% 96.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590122 4999.1.1.1 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.77 56.0 5.61e-01 77.8% 87.7%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.15e-01 77.8% 100.0%
4012945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.55e-01 82.5% 100.0%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.28e-01 95.2% 98.3%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.35e-01 90.5% 100.0%
3741401 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.61 44.0 3.54e-01 79.4% 76.3%
4024913 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.70e-01 96.8% 83.1%
3284595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.81e-01 84.1% 100.0%
3242263 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 36.0 3.73e-01 84.1% 65.0%
4165723 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.58 47.0 4.67e-01 88.9% 89.2%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.58 46.0 4.58e-01 87.3% 89.2%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 47.0 4.11e-01 92.1% 74.7%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 43.0 4.26e-01 90.5% 80.0%
4119693 6064.1.1.0 ↗ few secondary structure elements › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 › EAGR box containing domain in MG200 0.55 35.0 3.90e-01 71.4% 83.7%
3537417 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 37.0 4.25e-01 71.4% 100.0%
3649175 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 2.88e-01 95.2% 24.7%
3509389 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 43.0 3.54e-01 93.7% 80.0%
3707023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.32e-01 77.8% 83.0%
None — 0.53 40.0 2.50e-01 79.4% 96.9%
3782195 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 42.0 3.85e-01 88.9% 95.3%
3269927 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.52 42.0 3.63e-01 95.2% 98.1%
3389763 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.52 43.0 3.72e-01 90.5% 94.7%
4503485 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.52 37.0 2.40e-01 77.8% 17.5%
1923797 377.1.1.28 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Pcf11_C 0.51 33.0 3.23e-01 87.3% 55.3%
3314636 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 40.0 2.89e-01 90.5% 63.9%
3267765 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 35.0 3.11e-01 76.2% 80.9%
2097 6.1.1.12 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Agglutinin 0.50 37.0 2.98e-01 84.1% 97.3%