←Back to structures

KP054477.1__AIZ94734.1__LfeInf_108__00108

Bact-Vir

KP054477.1__AIZ94734.1__LfeInf_108__00108

Identity

Accession:
KP054477 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Hopescreekvirus› Lactobacillus_phage_LfeInf

TaxID: 1567484

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qbyB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.30e-01 95.8% 97.8%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.15e-01 88.9% 91.0%
3fdqA01 1.20.120.1030 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Motility repressor MogR, DNA-binding domain 0.64 43.0 3.63e-01 70.8% 41.0%
7kypB01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.62 44.0 3.05e-01 77.8% 57.0%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 54.0 4.81e-01 100.0% 85.4%
2ly1A01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.59 49.0 4.78e-01 90.3% 88.6%
1q8cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.59 48.0 4.04e-01 93.1% 86.4%
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.59 50.0 4.37e-01 100.0% 66.1%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.58 37.0 3.91e-01 84.7% 72.3%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.57 37.0 3.68e-01 81.9% 63.2%
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.56 41.0 4.31e-01 90.3% 87.7%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.56 48.0 3.81e-01 98.6% 95.5%
3cp8D03 1.10.10.1800 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA 0.56 39.0 3.50e-01 75.0% 82.1%
1irxA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 42.0 3.95e-01 84.7% 86.0%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 41.0 4.30e-01 80.6% 90.6%
2aaoB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 3.55e-01 93.1% 80.6%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 40.0 3.68e-01 86.1% 88.1%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.51 43.0 3.86e-01 93.1% 100.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074546 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.45e-01 98.6% 74.1%
3659978 101.1.1.138 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.71 59.0 5.42e-01 91.7% 94.7%
4979742 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 5.39e-01 98.6% 78.8%
4991095 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.66 55.0 4.31e-01 93.1% 86.5%
3715143 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.52e-01 100.0% 87.5%
5029930 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.60e-01 88.9% 62.0%
4944051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 58.0 4.38e-01 100.0% 52.4%
5022566 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 4.69e-01 90.3% 90.9%
4387216 101.1.2.59 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF480 0.63 52.0 4.86e-01 90.3% 82.2%
3706618 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.63 53.0 5.23e-01 95.8% 89.3%
4936137 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.62 50.0 5.24e-01 94.4% 96.9%
4196356 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.61 48.0 4.19e-01 91.7% 72.5%
3712603 1091.1.1.1 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.60 45.0 4.59e-01 86.1% 85.7%
3600801 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.59 45.0 4.58e-01 86.1% 85.7%
4161013 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.59 43.0 4.59e-01 84.7% 91.7%
5011654 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.57 47.0 4.78e-01 90.3% 100.0%
4252854 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.57 47.0 4.68e-01 93.1% 94.7%
4381449 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.80e-01 93.1% 97.1%
4494820 507.1.1.1 ↗ alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB 0.57 42.0 3.39e-01 80.6% 44.7%
3202558 610.2.1.1 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.56 40.0 3.63e-01 77.8% 94.3%
3925286 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 40.0 2.89e-01 80.6% 54.3%
3448927 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 38.0 3.34e-01 72.2% 48.7%
3668122 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 35.0 3.13e-01 72.2% 43.6%
3730765 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.53 46.0 3.76e-01 94.4% 75.4%
4001420 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 41.0 4.21e-01 88.9% 90.0%
4108470 197.1.1.1 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.52 44.0 3.69e-01 100.0% 73.3%
4931148 2007.1.2.49 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › TfuA 0.51 35.0 2.61e-01 73.6% 97.6%
3674466 610.2.1.1 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.51 38.0 3.38e-01 81.9% 92.7%
4930122 2007.1.3.61 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › TfuA 0.50 35.0 2.61e-01 75.0% 97.6%
D2 high residues 239-496
PDB
Domain cluster: rep: IMGVR_UViG_3300020369_000079-3300020369-Ga0211709_100073652__D2-241
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.84 56.0 6.38e-01 100.0% 87.2%
3floA02 3.60.21.60 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.70 58.0 6.01e-01 100.0% 91.3%
3qfmA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.69 56.0 5.67e-01 100.0% 84.1%
1qhwA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.64 61.0 5.77e-01 100.0% 94.3%
2nxfA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.63 60.0 5.67e-01 100.0% 98.4%
3c9fA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 58.0 5.32e-01 100.0% 84.8%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 40.0 4.81e-01 95.3% 99.4%
1bwpA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.58 39.0 4.27e-01 95.7% 81.1%
4xvhA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 43.0 4.60e-01 76.4% 92.8%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 36.0 4.34e-01 97.7% 99.4%
4avnA00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.56 49.0 4.19e-01 93.4% 95.0%
1gz1A00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.56 49.0 4.38e-01 93.4% 93.4%
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 30.0 3.60e-01 96.1% 75.3%
2hsjD00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 38.0 4.22e-01 96.1% 83.6%
4oifB01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 50.0 4.34e-01 97.7% 96.5%
4uniC01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 50.0 4.32e-01 97.7% 94.5%
2qhaA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 51.0 4.63e-01 98.8% 91.4%
2xhyD00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 50.0 4.12e-01 98.4% 98.7%
2waaA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 41.0 4.50e-01 76.0% 92.5%
1kwgA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 49.0 4.31e-01 97.7% 91.1%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 50.0 4.57e-01 98.8% 95.8%
4hyqA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.54 41.0 4.26e-01 76.7% 95.3%
2w9xA02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 43.0 4.63e-01 96.1% 96.0%
4k7jA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 38.0 4.09e-01 76.4% 83.2%
1dysA00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.53 48.0 4.39e-01 98.4% 98.0%
1j93A00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.52 47.0 4.30e-01 97.3% 98.8%
3n2oA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.51 44.0 4.29e-01 89.9% 98.2%
3k1dA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 46.0 4.02e-01 97.7% 93.4%
3rkrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 4.04e-01 74.8% 97.7%
2csxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 34.0 3.69e-01 100.0% 78.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995790 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.90 87.0 8.47e-01 100.0% 96.1%
3279624 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.84 53.0 6.43e-01 100.0% 93.1%
4937757 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.84 52.0 6.42e-01 99.6% 94.1%
4963182 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.84 53.0 6.59e-01 100.0% 98.8%
4944122 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.73 57.0 5.99e-01 100.0% 87.1%
4519677 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.71 64.0 6.55e-01 100.0% 96.8%
4376563 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.70 64.0 6.44e-01 100.0% 96.1%
3989940 246.2.1.9 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.68 56.0 5.45e-01 99.2% 78.2%
3799690 246.2.1.7 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B 0.68 65.0 6.21e-01 100.0% 88.5%
3610277 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.68 64.0 5.46e-01 100.0% 77.5%
5054865 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.68 61.0 6.25e-01 97.7% 96.4%
3706064 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.67 64.0 5.37e-01 100.0% 76.8%
5080233 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.67 62.0 5.82e-01 100.0% 81.6%
4558117 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.65 57.0 5.92e-01 100.0% 95.5%
4026997 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.65 62.0 6.02e-01 100.0% 93.7%
3460251 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.64 61.0 5.62e-01 100.0% 81.0%
5046299 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 37.0 3.58e-01 74.0% 51.4%
4967914 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 29.0 3.47e-01 74.4% 62.9%
4943142 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.60 57.0 5.60e-01 100.0% 95.4%
3451370 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.60 45.0 3.99e-01 76.0% 93.3%
3835832 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.58 46.0 4.17e-01 82.2% 86.4%
4932745 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.58 54.0 5.44e-01 100.0% 99.6%
10054 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.56 39.0 4.25e-01 96.1% 84.8%
3835691 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.55 45.0 4.13e-01 84.9% 92.3%
3285907 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.55 42.0 4.24e-01 77.1% 91.2%
4136793 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.54 35.0 3.82e-01 100.0% 76.7%
4657614 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.54 49.0 4.26e-01 97.7% 93.3%
4257576 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.54 48.0 4.20e-01 97.7% 92.1%
4020653 2002.2.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › Cellulases › Cellulases › Glyco_hydro_6 0.53 48.0 4.36e-01 98.1% 95.5%
1179897 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.53 43.0 4.67e-01 96.1% 98.2%
4160171 2002.1.1.89 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_26 0.53 49.0 4.44e-01 98.4% 90.6%
4058712 2002.1.1.4 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.53 47.0 4.02e-01 97.7% 90.5%
3836058 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.53 30.0 3.86e-01 81.4% 97.2%
3714469 2002.1.1.45 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd 0.52 47.0 3.58e-01 97.7% 52.5%
3690063 2002.1.1.32 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN 0.51 47.0 4.25e-01 98.1% 91.0%
5072914 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 39.0 3.91e-01 77.5% 88.1%
4991993 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 26.0 3.58e-01 95.7% 96.8%
145518 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.51 37.0 4.04e-01 74.8% 97.7%
3342999 2003.1.1.148 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short, KR 0.50 38.0 3.70e-01 76.4% 75.4%
D3 medium residues 84-189
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z2iA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.65 36.0 3.87e-01 82.1% 62.4%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.61 36.0 3.98e-01 70.8% 71.8%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.59 36.0 3.82e-01 81.1% 68.5%
2mc3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.36e-01 77.4% 93.2%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 34.0 3.78e-01 73.6% 74.4%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.55e-01 83.0% 88.8%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 33.0 3.67e-01 94.3% 74.7%
1izmA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.56 49.0 4.25e-01 100.0% 95.3%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.54 40.0 3.37e-01 78.3% 90.3%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.75e-01 80.2% 91.3%
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.52 42.0 3.41e-01 88.7% 69.3%
1z9eA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.52 31.0 3.51e-01 84.0% 77.1%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 35.0 3.32e-01 72.6% 58.8%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.50 32.0 3.27e-01 88.7% 64.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3889024 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.28e-01 86.8% 75.8%
3447076 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 42.0 4.47e-01 73.6% 93.3%
3885941 101.1.1.132 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N 0.59 38.0 4.48e-01 72.6% 100.0%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.59 40.0 3.90e-01 100.0% 63.5%
3411866 3919.1.1.0 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.58 42.0 4.03e-01 75.5% 81.6%
3911019 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.58 40.0 3.18e-01 70.8% 51.4%
4031223 2008.1.1.204 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2800 0.58 40.0 3.03e-01 70.8% 36.4%
3620069 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.54 39.0 3.95e-01 97.2% 75.2%
3711112 4198.1.1.0 ↗ alpha arrays › TerB-like › TerB-like › TerB-like 0.52 41.0 3.76e-01 86.8% 66.2%
3487134 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.51 37.0 4.05e-01 93.4% 90.0%
3337263 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.51 35.0 3.79e-01 78.3% 84.4%
3748203 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.51 36.0 3.14e-01 91.5% 48.8%
55469 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.51 31.0 3.50e-01 84.9% 80.2%