←Back to structures

KP054477.1__AIZ94739.1__LfeInf_113__00113

Bact-Vir

KP054477.1__AIZ94739.1__LfeInf_113__00113

Identity

Accession:
KP054477 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Hopescreekvirus› Lactobacillus_phage_LfeInf

TaxID: 1567484

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-81
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.70 54.0 5.35e-01 96.0% 77.5%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 47.0 4.27e-01 88.0% 55.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.66 44.0 3.55e-01 80.0% 36.2%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 44.0 3.78e-01 85.3% 41.9%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 3.74e-01 88.0% 46.0%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 44.0 4.25e-01 80.0% 69.0%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.60 51.0 4.08e-01 96.0% 73.2%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.59 42.0 3.87e-01 89.3% 57.7%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 50.0 3.28e-01 96.0% 89.5%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 42.0 4.55e-01 93.3% 95.0%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 45.0 4.15e-01 86.7% 98.0%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.57 50.0 4.11e-01 98.7% 80.9%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 33.0 3.53e-01 100.0% 65.6%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.56 42.0 3.49e-01 80.0% 90.4%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 48.0 4.26e-01 94.7% 79.2%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 33.0 3.55e-01 89.3% 69.4%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 49.0 3.16e-01 98.7% 74.8%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 49.0 3.15e-01 100.0% 89.5%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.55 43.0 4.10e-01 88.0% 82.6%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.86e-01 86.7% 85.0%
1avwB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 48.0 3.70e-01 100.0% 86.5%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 43.0 2.99e-01 93.3% 79.9%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 46.0 4.00e-01 94.7% 63.5%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.47e-01 93.3% 46.3%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.53 45.0 4.43e-01 96.0% 91.4%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 3.52e-01 97.3% 54.5%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 42.0 3.48e-01 94.7% 50.0%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.96e-01 92.0% 90.6%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.44e-01 98.7% 57.6%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.45e-01 92.0% 48.9%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.17e-01 100.0% 51.0%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.51 42.0 4.18e-01 97.3% 93.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.59e-01 70.7% 82.5%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.27e-01 93.3% 46.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719817 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 48.0 4.02e-01 80.0% 41.5%
3487292 5.1.4.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.66 45.0 2.67e-01 70.7% 10.3%
3932851 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.64 43.0 3.76e-01 73.3% 44.2%
3910727 4.1.1.353 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.64 44.0 4.61e-01 92.0% 81.5%
3332613 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.64 43.0 3.73e-01 73.3% 44.2%
3406523 316.1.1.6 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.63 58.0 4.09e-01 100.0% 63.2%
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 37.0 4.27e-01 80.0% 88.0%
3491449 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.61 37.0 2.79e-01 86.7% 24.2%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 38.0 4.16e-01 85.3% 80.0%
4256799 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 42.0 3.51e-01 73.3% 40.7%
3592763 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.60 38.0 2.84e-01 88.0% 25.3%
3407532 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.60 39.0 4.51e-01 82.7% 100.0%
2033715 3804.1.1.1 ↗ alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease 0.59 42.0 2.90e-01 76.0% 41.2%
5042834 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 42.0 3.42e-01 77.3% 72.7%
3501948 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.59 52.0 3.82e-01 98.7% 39.0%
5012403 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 51.0 4.01e-01 100.0% 49.7%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 37.0 3.76e-01 86.7% 65.3%
3614247 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.52e-01 82.7% 45.6%
4016261 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.57 45.0 3.03e-01 89.3% 58.8%
3256498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.03e-01 89.3% 85.5%
3598462 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.75e-01 93.3% 50.4%
3331552 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.57 45.0 3.08e-01 86.7% 54.3%
4641708 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.56 48.0 3.69e-01 93.3% 76.4%
3926430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.90e-01 80.0% 83.3%
1005587 73.1.1.5 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › PrgH 0.56 48.0 4.26e-01 94.7% 79.2%
3281056 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.55 41.0 3.10e-01 80.0% 52.7%
4295817 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 48.0 4.06e-01 100.0% 57.7%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 42.0 2.71e-01 82.7% 31.0%
3607724 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.55 39.0 3.29e-01 74.7% 43.8%
3934185 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 47.0 3.87e-01 98.7% 54.7%
3512143 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 35.0 3.72e-01 82.7% 78.5%
3632911 243.3.1.49 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Saf4_Yju2 0.53 43.0 4.17e-01 89.3% 96.5%
5003966 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 34.0 3.63e-01 96.0% 76.9%
3467678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 35.0 3.14e-01 88.0% 46.4%
3907200 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 2.64e-01 97.3% 11.4%
5054481 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.52 39.0 3.60e-01 100.0% 59.0%
3838342 3799.1.1.1 ↗ alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion 0.52 46.0 2.81e-01 100.0% 18.5%
3614205 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.22e-01 85.3% 43.6%
3882965 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.51 45.0 2.78e-01 100.0% 83.1%
3819081 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 44.0 2.93e-01 96.0% 78.0%
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 39.0 3.47e-01 96.0% 57.3%
2442052 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.51 38.0 3.19e-01 84.0% 88.8%