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KP054477.1__AIZ94749.1__LfeInf_123__00123

Bact-Vir

KP054477.1__AIZ94749.1__LfeInf_123__00123

Identity

Accession:
KP054477 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Hopescreekvirus› Lactobacillus_phage_LfeInf

TaxID: 1567484

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-160
PDB
Domain cluster: rep: IMGVR_UViG_3300033990_000272-3300033990-Ga0373184_0008483_4516_5451__D198-306
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 75.0 5.91e-01 99.0% 52.8%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.80 75.0 5.85e-01 99.0% 53.8%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 74.0 7.06e-01 99.0% 87.4%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 73.0 5.14e-01 100.0% 41.9%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 72.0 6.72e-01 99.0% 87.3%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 72.0 6.86e-01 99.0% 87.4%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 69.0 6.57e-01 100.0% 82.0%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 70.0 5.84e-01 99.0% 72.0%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.67e-01 100.0% 85.7%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 68.0 6.64e-01 100.0% 89.4%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 69.0 5.03e-01 100.0% 39.8%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 67.0 6.28e-01 100.0% 80.6%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 67.0 5.06e-01 100.0% 41.6%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 68.0 6.34e-01 100.0% 80.5%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 68.0 5.09e-01 100.0% 42.6%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 67.0 5.13e-01 99.0% 45.7%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 68.0 5.02e-01 100.0% 44.0%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 67.0 6.49e-01 100.0% 89.4%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 67.0 5.07e-01 99.0% 44.2%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 68.0 5.06e-01 100.0% 43.8%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 67.0 5.06e-01 99.0% 45.4%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.73 67.0 5.04e-01 100.0% 42.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 65.0 4.91e-01 100.0% 44.2%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 57.0 4.40e-01 98.1% 39.5%
1ysrA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 43.0 3.97e-01 85.6% 95.6%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 28.0 3.29e-01 73.1% 73.6%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 28.0 3.03e-01 86.5% 60.0%
3vnnA00 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 41.0 3.89e-01 86.5% 91.1%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.50 44.0 2.98e-01 99.0% 96.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3291440 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.85 72.0 7.09e-01 99.0% 84.5%
2392242 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 68.0 6.64e-01 100.0% 82.3%
3788095 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.81 75.0 6.78e-01 100.0% 83.0%
4360456 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.80 75.0 6.84e-01 99.0% 82.3%
3387590 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 68.0 6.63e-01 100.0% 83.5%
3251045 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 74.0 6.37e-01 100.0% 70.8%
3346536 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 74.0 6.51e-01 100.0% 81.4%
4437554 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 74.0 6.91e-01 99.0% 84.8%
5979 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 74.0 6.97e-01 99.0% 84.6%
2834340 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.79 72.0 6.52e-01 100.0% 82.7%
1102993 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 73.0 6.51e-01 99.0% 73.2%
4876750 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 73.0 6.85e-01 99.0% 83.2%
5039219 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 72.0 6.73e-01 100.0% 84.0%
4542774 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 73.0 6.89e-01 99.0% 88.3%
4500973 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 73.0 6.84e-01 99.0% 86.2%
4379629 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.78 72.0 6.83e-01 99.0% 85.0%
2096126 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 72.0 6.79e-01 99.0% 85.2%
4633559 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.77 72.0 6.66e-01 99.0% 85.2%
4619259 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.77 71.0 6.28e-01 100.0% 77.2%
3478975 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 70.0 6.41e-01 100.0% 81.5%
4606763 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.76 71.0 6.72e-01 99.0% 86.7%
3932752 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 70.0 6.56e-01 100.0% 85.6%
4480621 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.75 67.0 6.41e-01 100.0% 83.3%
3624709 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.75 70.0 6.42e-01 100.0% 84.6%
2987540 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.75 67.0 6.19e-01 100.0% 76.9%
3407531 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.75 69.0 6.31e-01 100.0% 80.0%
3230926 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.75 69.0 6.40e-01 100.0% 82.3%
3244230 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 70.0 6.10e-01 100.0% 81.3%
3787700 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 69.0 5.99e-01 100.0% 91.6%
3256387 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.75 69.0 5.96e-01 100.0% 88.4%
5978 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.75 68.0 6.43e-01 100.0% 83.7%
2878151 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 67.0 6.37e-01 100.0% 83.5%
3936915 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 69.0 6.34e-01 100.0% 85.4%
1924008 227.1.1.10 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.74 69.0 6.37e-01 100.0% 82.0%
2492033 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 69.0 6.16e-01 100.0% 79.3%
4876748 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 67.0 6.26e-01 100.0% 81.5%
4650306 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.74 67.0 6.41e-01 100.0% 85.0%
3936914 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.74 68.0 6.29e-01 100.0% 84.6%
2392831 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 68.0 6.32e-01 100.0% 86.6%
143428 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 68.0 6.46e-01 100.0% 87.5%
3210421 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 67.0 5.82e-01 100.0% 81.9%
3782606 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.73 67.0 5.96e-01 100.0% 80.7%
5010672 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.72 66.0 6.29e-01 100.0% 88.3%
3728061 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.72 67.0 6.11e-01 100.0% 81.2%
3743202 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.72 66.0 6.30e-01 100.0% 90.0%
4995028 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 65.0 6.10e-01 100.0% 88.0%
3962048 227.1.1.15 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PF26035 0.71 55.0 5.61e-01 87.5% 84.0%
3791518 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.71 57.0 5.46e-01 89.4% 74.2%
2392884 227.1.1.14 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C 0.69 61.0 5.83e-01 100.0% 82.5%
3370663 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.60 33.0 4.23e-01 95.2% 94.9%
4977260 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 29.0 2.52e-01 86.5% 30.7%
4990916 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.57 33.0 3.43e-01 86.5% 59.0%
3250994 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 34.0 4.20e-01 75.0% 100.0%
4440734 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 32.0 3.80e-01 78.8% 100.0%
81581 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.50 44.0 2.98e-01 99.0% 96.8%